RNA id: TU1004181


Basic Information

Item Value
RNA id TU1004181
length 660
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G882511
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35177845 ~ 35178504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccaaatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctatagatctctgcagttcatccagagtgatcatgggccttttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattgtcgcttgcacagtgctccttgggatgtttaaggcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004176 lncRNA downstream 14257 35161292 ~ 35163588 (-) False G882506
TU1004175 lncRNA downstream 14257 35161350 ~ 35163588 (-) True G882506
TU1004173 lncRNA downstream 14321 35161292 ~ 35163524 (-) False G882506
TU1004174 lncRNA downstream 14321 35161350 ~ 35163524 (-) False G882506
TU1004031 lncRNA downstream 56660 35120277 ~ 35121185 (-) True G882388
TU1004183 lncRNA upstream 808 35179312 ~ 35179537 (-) True G882513
TU1004184 lncRNA upstream 1133 35179637 ~ 35179853 (-) True G882514
TU1004187 lncRNA upstream 3818 35182322 ~ 35182602 (-) True G882517
TU1004026 lncRNA upstream 29688 35208192 ~ 35277138 (-) False G882385
TU1004027 lncRNA upstream 29688 35208192 ~ 35211040 (-) True G882385
XM_036989347.1 mRNA downstream 5703 35163598 ~ 35172142 (-) True LOC110534897
XM_036989346.1 mRNA downstream 17792 35159544 ~ 35160053 (-) True LOC118966630
XM_036990125.1 mRNA downstream 18506 35123145 ~ 35159339 (-) True LOC110533729
XM_021618210.2 mRNA downstream 18507 35123145 ~ 35159338 (-) False LOC110533729
XM_021618212.2 mRNA upstream 33313 35211817 ~ 35245860 (-) True LOC110533731
XM_036990128.1 mRNA upstream 72151 35250655 ~ 35292455 (-) True LOC110533732
XM_021618215.2 mRNA upstream 152228 35330732 ~ 35341314 (-) False LOC110533734
XM_021618216.2 mRNA upstream 152228 35330732 ~ 35341314 (-) True LOC110533734
XM_021618218.2 mRNA upstream 166089 35344593 ~ 35357587 (-) False LOC110533735
TU1003687 other downstream 283917 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 579170 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 581663 34592322 ~ 34596182 (-) True LOC110533714
TU1003325 other downstream 760584 34413063 ~ 34417261 (-) True G881778
TU1002672 other downstream 1204533 33939435 ~ 33973312 (-) True LOC110533687
TU1004252 other upstream 124410 35302914 ~ 35304055 (-) True G882578
TU1004213 other upstream 142310 35320814 ~ 35321706 (-) True G882539
TU1004310 other upstream 248745 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 419813 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 702020 35880524 ~ 35880951 (-) True G883128

Expression Profile