RNA id: TU1004026


Basic Information

Item Value
RNA id TU1004026
length 1449
lncRNA type read_through
GC content 0.37
exon number 2
gene id G882385
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35208192 ~ 35277138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctcacacacacacacatgaatcATCCATGCTTTCTGTTAAAATATGTAAGGTTAGGAAAGACTATGGTATGTGCTTAGTTCCACAGTTACTTTACACTACAATATTATCAGGGTTTTATCCATGTGACCCACATATTGCCATGTTGTACCACAAGCCATTTTTCCTCATGAGCCCATTCCATTCACAATTCAATCTACAAGTAAATGTGTATACTATCCATGGTGTGTGTAGCCACGCACTTACAGATATGTGGATATATTCCTGTTGGCAAAAGTCATGCTTTTCTTTGCTACATACAAGATTAGTCATGACACATTCCCTCCAACCAAAGGTATTCATGAGAATTTTATTAGTATGGAAAAAACGTGCTGCAACTGCCAGACCACAGATCTTTCTGAGAGAAAGGATTTAATTTAAAACATGTTTCAGAATGATGTGTGAATGTCATTTCATGAGCAGTCCTATTCTTACATAATGATACACATAGAAGGAGCATGTTTCACTAAATGACAACAGTGCCTCTTGGTGGACAGATCGTGTTGTTCCCCAGTGTCACTTGTTATGTAATACTATCTCCATATATCCGTTTTTTAAGTGATCATTTGGAACATATTTATTTGCCTGTGTGGCTGTATGTTTTTATTCTCGGAAAGACTGCAACAAATGTatagtaacaaaaacaataaagagctTGAGGAAGAAGACAGAAAGAACATGGAAATATTACGTTCACATATAGATATACTTATGTTTGCTAATGCGCGTCTTCAAGATTGAACAATAGAAACATAACGGTTTTGTTTTCAAAAAGAGATAAAGTATTTGTATTGTTATTTTGTTGAAAAGAGGAAATAATGTATTAGCTTTGTATTGTATTAAGACAGGGGTGCTACCTGGTAGGTTTTCGACCTGTAATCTCAGAATTCTGAGTGAGACTGAAGAAAACTTGACAATTAAACACATGCCAAGTAGCATTTTCTTTCTTCTAAGTCTGACCCCTACTTTCTCTGTCTTGTTTTCAACCTTGCAGTATTGAATGGTTGCCCTGTTGAAACGCTTTCTCAGTCATTGTCTACTGGCTACTCTTTTAGGTGAACAGTGCATGTCTTTATATGGGCACCAAGATGATGAGATGAAGAAGGGCATCCTCTTCTGGTATTGGTTTGATCAGTTACACTGATTCAATAGAAAGCTTCATATTTACAGTAACTGCCAAGGATTTATCCCCAAACAGCACAATACTTGCCTGTGACCACTGCATGTGGAAACTAGTGTGAACTAGCAAGACAGCTTTTCACTAAAGGTCCTCCTGGAAAATAATATAAAAACGTTATGTCCCTGAAAATCTTGAATCAGACAGTTTATTAAAAACGTATCTAAGGCAGAACTCTTTTGAAACACTTTGGGATAGTCTCTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004187 lncRNA downstream 25590 35182322 ~ 35182602 (-) True G882517
TU1004184 lncRNA downstream 28339 35179637 ~ 35179853 (-) True G882514
TU1004183 lncRNA downstream 28655 35179312 ~ 35179537 (-) True G882513
TU1004181 lncRNA downstream 29688 35177845 ~ 35178504 (-) True G882511
TU1004175 lncRNA downstream 44604 35161350 ~ 35163588 (-) True G882506
TU1004247 lncRNA upstream 20244 35297382 ~ 35297615 (-) True G882573
TU1004253 lncRNA upstream 27664 35304802 ~ 35305063 (-) True G882579
TU1004254 lncRNA upstream 28117 35305255 ~ 35305986 (-) True G882580
TU1004209 lncRNA upstream 41473 35318611 ~ 35320695 (-) True G882535
TU1004277 lncRNA upstream 90377 35367515 ~ 35370773 (-) False defbl1
XM_036989347.1 mRNA downstream 36050 35163598 ~ 35172142 (-) True LOC110534897
XM_036989346.1 mRNA downstream 48139 35159544 ~ 35160053 (-) True LOC118966630
XM_036990125.1 mRNA downstream 48853 35123145 ~ 35159339 (-) True LOC110533729
XM_036990123.1 mRNA downstream 48854 35123145 ~ 35159338 (-) False LOC110533729
XM_021618215.2 mRNA upstream 53594 35330732 ~ 35341314 (-) False LOC110533734
XM_021618216.2 mRNA upstream 53594 35330732 ~ 35341314 (-) True LOC110533734
XM_021618218.2 mRNA upstream 67455 35344593 ~ 35357587 (-) False LOC110533735
XM_021618217.2 mRNA upstream 67455 35344593 ~ 35357905 (-) True LOC110533735
NM_001124434.1 mRNA upstream 92976 35370114 ~ 35370730 (-) False defbl1
TU1003687 other downstream 314264 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 609517 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 612010 34592322 ~ 34596182 (-) True LOC110533714
TU1003325 other downstream 790931 34413063 ~ 34417261 (-) True G881778
TU1002672 other downstream 1234880 33939435 ~ 33973312 (-) True LOC110533687
TU1004252 other upstream 25776 35302914 ~ 35304055 (-) True G882578
TU1004213 other upstream 43676 35320814 ~ 35321706 (-) True G882539
TU1004310 other upstream 150111 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 321179 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 603386 35880524 ~ 35880951 (-) True G883128

Expression Profile