RNA id: TU1004252


Basic Information

Item Value
RNA id TU1004252
length 1142
RNA type TUCP
GC content 0.43
exon number 1
gene id G882578
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35302914 ~ 35304055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcctccattcctcctccgaaATCCACTTTTCCATGTTCCTGTCCCAATATTTCTCTTCTCCCGGCTTTGCTAGTGGCCTGGTGGCATCccgacatacagtgccttgcgaaagtattcgccccctttgcaaccttttgccacatttcaggcttcaaacataaagatttaaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatgtcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccaagatactgttgtgaagaagtttaaagccggatttggatacaaaacatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgttcctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagacatttcttaaagatatccataaaaagtgtctgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatgcccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004247 lncRNA downstream 5299 35297382 ~ 35297615 (-) True G882573
TU1004026 lncRNA downstream 25776 35208192 ~ 35277138 (-) False G882385
TU1004214 lncRNA downstream 69050 35227183 ~ 35233864 (-) True G882540
TU1004027 lncRNA downstream 91874 35208192 ~ 35211040 (-) True G882385
TU1004187 lncRNA downstream 120312 35182322 ~ 35182602 (-) True G882517
TU1004253 lncRNA upstream 747 35304802 ~ 35305063 (-) True G882579
TU1004254 lncRNA upstream 1200 35305255 ~ 35305986 (-) True G882580
TU1004209 lncRNA upstream 14556 35318611 ~ 35320695 (-) True G882535
TU1004277 lncRNA upstream 63460 35367515 ~ 35370773 (-) False defbl1
TU1004278 lncRNA upstream 64448 35368503 ~ 35370773 (-) True defbl1
XM_036990128.1 mRNA downstream 10459 35250655 ~ 35292455 (-) True LOC110533732
XM_021618212.2 mRNA downstream 57054 35211817 ~ 35245860 (-) True LOC110533731
XM_036989347.1 mRNA downstream 130772 35163598 ~ 35172142 (-) True LOC110534897
XM_036989346.1 mRNA downstream 142861 35159544 ~ 35160053 (-) True LOC118966630
XM_036990125.1 mRNA downstream 143575 35123145 ~ 35159339 (-) True LOC110533729
XM_021618215.2 mRNA upstream 26677 35330732 ~ 35341314 (-) False LOC110533734
XM_021618216.2 mRNA upstream 26677 35330732 ~ 35341314 (-) True LOC110533734
XM_021618218.2 mRNA upstream 40538 35344593 ~ 35357587 (-) False LOC110533735
XM_021618217.2 mRNA upstream 40538 35344593 ~ 35357905 (-) True LOC110533735
NM_001124434.1 mRNA upstream 66059 35370114 ~ 35370730 (-) False defbl1
TU1003687 other downstream 408986 34892979 ~ 34893928 (-) True LOC110533718
TU1003456 other downstream 704239 34598367 ~ 34598675 (-) True LOC110534894
TU1003400 other downstream 706732 34592322 ~ 34596182 (-) True LOC110533714
TU1003325 other downstream 885653 34413063 ~ 34417261 (-) True G881778
TU1002672 other downstream 1329602 33939435 ~ 33973312 (-) True LOC110533687
TU1004213 other upstream 16759 35320814 ~ 35321706 (-) True G882539
TU1004310 other upstream 123194 35427249 ~ 35428208 (-) True G882631
TU1004715 other upstream 294262 35598317 ~ 35599085 (-) True G882971
TU1004896 other upstream 576469 35880524 ~ 35880951 (-) True G883128
TU1005623 other upstream 1085942 36389997 ~ 36390914 (-) True G883753

Expression Profile