RNA id: TU1004534


Basic Information

Item Value
RNA id TU1004534
length 3097
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G882828
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 35818068 ~ 35869469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTGTGAATAACATTTGACCCCACGTATTGCTGTGCATTATATTACCCAAATGGACAACCTCACTGGAAGTTTTGTTTTACAATGACAATGAAATGAAGCACAATATTTTAATACCTTGGGTTTAAAATGGCTTTGATTAAGTTTAATTGCTCAATTCAAAATGAACACAGCAACCCTGTGGTTTAAAAGCAGAGAGCATTAATACATGTGGAGAATGAAAACGACTGATCTTAGAACTAGCACCTCCACAGAATTGGGTTTCCTTTCACCCTCCACACGGTAATCATTTAAAAGGACAAACAACACATACTTATACATCAAGAGTGAGTGCAAAAAAAAGATGCCATAAGTCCTTTGACACACTTAGACAAGAGAGACTCTCACATTTCACTTGAATGTACAGCACTTTGGCACATTCAGCTGTTTGCTTTGGTTACAGTAACGGACAGCTCATTTACATTCACAATCTAAAGCAAAAGCAGCTAGATCATGTTCACTATCTATATAGATATCAGTAAGCGAGGGGACTGGGGTGTAATTCTTAGTTCTGATAAGCATGGAGAGCAGTCATCTCTTTCAGTCACTCAGATTTAGAGGGCTGAATGGAGTCCACATAACACAAGCTGACAATCATGTCAGGGACACTTGCAAACCAAAACCAGAGACGCTACATCCAATGTAAAAGAAAAGGAGCAACAGACATCAGAGAGTCATCTTCCTGGACTGAGAACCGAGGGGATAAGACTGGTGAGCAGGAGGGTGGGAGGGGCTCGAAGTTATGATgaccagggggaggggcttgaAGTTATGATGCCCAGGAGTTCTATTCATCTCTTAGGCTGTTGTTGAAGTGATAAATCAGATGGTCAAGATGAACCATGTGCCAGTTAGCAAAGCCCTCCAGGGAAGCAGCCAGCAGTAGGTAGGGGAATCAGGCTGCAGGCGTGTCTGAGGGGATGGATGAATGTTCAGTAGTGTGATGTGTAACGGCTCTCCTCAGGCCCAGTCTATGGGCGGATGAAGACTTGACAGGGCACCGTTTTTAACAGCGCAGCCCTTTTCTGCCCAGGAACCGCAGCACTGCATAGTTATAGGTGGTAGCTACCACATACAGAAACAGCCAAGAGAGCAATCCCTGCACCAGCAAAGGCAGCGATGTATAGGTCATAGGTGACAAAGAaCTTTTGTTTTGCAGATGGATGCCAAGGTCATTCCACAAGCCTTACCTGGCATTGCATTCCAAGGCAGCAGACCTAATGAGAAGCTTGTCTCATTAATGTGAAATtaaaaactgtacattttaaatgtaaaaaaaataaaaagtaatactaACATACGGTGGCCCGGCTAGCTCAATCATAAGCTAAACGTACCATACTGCCGAGCATCCATGCAGATCCAGCCGTGCTGGTTGATGCTGGGTGTCGTCTCAGCCAGGATGTTGATGTTGTGGCAGGTCTGTGCCAtattaaagaagaagaagacgggtATGGCTGTGAAGGCAAACACCGCCAGCCAGATCACTGCCAGGACGTATGTCACAATGATGAACTGTGGAGCAGCAAGCAGAGCCGGTCACAGGAAGTTATTGGTCAATCTCCAGGGGGATACAGGATGTGACACAACATGTCCTATAAGGCTTCATTACTGCAGTCATACAACACTATAGAGGATAAATAATCTAACAGGAGCATAATATCCCTGTAGCAATACTACAGGGATTCATGGATAATTATCTATAAATTGTTTTTGGATTAATTCTCAACCAGTGGGTAGATTACAAGCTAGAGTAGGCTATAGTGCCAATATTCTTTTAGCGACCTAAGAAGGAGGTGATgtaattccctctctctctcctcccttcctccctactCACCGTCAGACTAAGGCAGCGGCCACATCTGGTGCTCCGGAACTCTCCGAAGGTCTGCTTGACAGCGCTGGTGGTGTAGAATCCCTCGGCCAGCAGCAGGATGCAGTAGAGGAAGAAGAAAGAGGCCAGGCCATAGATCACGTACTGGAAGTACTTGATACTGGGAGACAAGGACAGGTCATAATAAGGAAAGGTCAGAGATTCCATGGTGACAAAAGGTGCTGTTGAGAGGTGTTTTCTCTTAACCTATCTTAAGGAAGGgttaccaatactactactactgctgcaagAGCCTTTACATTTCTGTTGCTTGATTTGCACAACTTATCTATAAATACAAACAATTAAATTAGGTTATTGCACTTAAACAGAAAAGTTTTAAAGAGTCACTCACAACGAGGCCAGGATAACATAGTCTTGTATGTTACGAACAAAGTAAGTCTCGACGAGCACCTCGGTGTGTGCCAGTGCCTCGTGCCCGCAGCCACAGAACAGTGCCATGCCGGTGAAGCAGAGCAGAGTGGAAACCAGGGAGGGGTAGGGCACTGCCCCCAGGCATCGGATACAGCAATCATAACAACCTGGTGAGGGGGCATAATACATCAACACACTGGcggcacacaccaacacacagcaCATCTACGACAACGTCCAGACATCTCTCAGTCACCCTGCTTGGGGAGCTGTTAAACAGAAAGACTCCACTGCTTCTGCCAAAATTCCAACAACACCCACTATCAACTTCCATCAACAGGCATGAAAGCAACAGAAAAATTACAGCGAAAAACAACAGCGAAACCAAGTGCAGTGTATCCAATCAAACAATGTTAAAGTGTCTATACAAAACCAGCCGCCACTGACTTCACAGCATTCTCATACACTTCCTCCAATGTAAGCTGGGGAAGCAGATAACAAACATCCAGACTGTTAATGGCTGTATTGATATAGGAATCAGAGAAAGAGATGCACCTAGGGCTTTGCAAAGCCAAGGCTGTCTGACCGGAAACATTTGTTCCTTTCGATCTTGTGCTCCTCAACAACAAGCAAAGAGTTTATGAATCAGTGATGCTAAAGGCTCAGCTGCAGGATATTTTCACCAAAAAACTGCTCTGTCTGCAATGGTTTCATCCATGTGTAAAAGCTCCTCAGCTCCAGCCAACGCCTCACAGCTCAGCCCCTCTACTCTCCAGAGTTCATCCCTCTTTCTCCACCAACCGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1004489 lncRNA upstream 80802 35736797 ~ 35737299 (+) True G882789
TU1004475 lncRNA upstream 145684 35671897 ~ 35672417 (+) True G882775
TU1004389 lncRNA upstream 168632 35537466 ~ 35649469 (+) True G882702
TU1004384 lncRNA upstream 285354 35529966 ~ 35532747 (+) True G882700
TU1004305 lncRNA upstream 397654 35420231 ~ 35420447 (+) True G882626
TU1004879 lncRNA downstream 49060 35870947 ~ 35871210 (+) True LOC110534918
TU1004952 lncRNA downstream 80933 35902820 ~ 35903134 (+) True G883158
TU1004920 lncRNA downstream 160997 35982884 ~ 35989671 (+) False LOC110533760
TU1004931 lncRNA downstream 160997 35982884 ~ 35989671 (+) False LOC110533760
TU1004912 lncRNA downstream 162369 35984256 ~ 35989671 (+) True LOC110533760
XM_021618253.2 mRNA upstream 114028 35697166 ~ 35704073 (+) False LOC110533751
XM_021619834.2 mRNA downstream 43228 35865115 ~ 35872210 (+) False LOC110534918
XM_021619836.2 mRNA downstream 43228 35865115 ~ 35872210 (+) False LOC110534918
XR_005053641.1 mRNA downstream 43228 35865115 ~ 35872210 (+) False LOC110534918
XR_005053635.1 mRNA downstream 65248 35887135 ~ 35987516 (+) False LOC110533760
XM_036990140.1 mRNA downstream 65248 35887135 ~ 35987603 (+) False LOC110533760
TU1004434 other upstream 131528 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 401863 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 496300 35318500 ~ 35321801 (+) False mogat3b
TU1003914 other upstream 496300 35318500 ~ 35321801 (+) True mogat3b
TU1003908 other upstream 498105 35316451 ~ 35319996 (+) False mogat3b
TU1005301 other downstream 471427 36293314 ~ 36295547 (+) False G883473
TU1005835 other downstream 977498 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 1027759 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 2933622 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 5890440 41712327 ~ 41717292 (+) False G889906

Expression Profile