RNA id: TU1005624


Basic Information

Item Value
RNA id TU1005624
length 1425
RNA type TUCP
GC content 0.35
exon number 1
gene id G883754
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36391103 ~ 36392527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTATGCTCACAACCTGTATCTCCGAAATGGTGTCGCTGGCGTATTTTGTTCGAATGTTGTAATATGTTATGCAATAGGCTTTAAAGTTTTTACAAGGTGTGTGTCCATCCATCCTGTTCGGGAATCACAAGTGAGAAATGTATATTGCAAACTTTCACCCATTttttagataaaaaaaatattggcCTACCTTCATGTTGTGTCAACCATCCATCCAAATAATGTAATTTCATGTCTACCTTTGTCTTTATAAACGTTCACACGTATTCCATAATAAGGGCTAATCCAGAGGGCAACATTGCAGCTGGTGATTGCCAGCAATCATTATTCGTCACGTAATGTAGGCATATGATATAATCAACACACGAGTAGGACAATTGATGCAAACATATAAGTATACATTTTCCGTTGTTTAAAATGGCATTATCACATTCCGCTGTCTTGTTTCATGGTATCACATGTAGAAATGTTGCATCCCCATGGTGTCACATGTATTTCACATTAGATCATGTTTTAACATGTCTAGTTTGATGTTATCACGTTGCTTTAACATGTCTAGTTTGATGTTATCACGTTGCTTTAACATGTCTAGTTTGATGTTATCACattgcttttacatgttgtcatgttatcacgttgctttaacatgttgtcatgttatcacattgcttttacatgttgtcatgttatcacgttgctttaacatgttgtcatgttatcacgttggtttaacatgttgtcatgttatcacgttggtttaacatgttgtcatgttatcacgttggtttaacatgtcatgttatcacgttgctttaacatgttgtcatgttatcacgttggtttaacatgttgtcatgttatcacgttgctttaacatgttgtcatgttatcacATTGCTTtaacatgttgtcatgttatcacgttgctttcacatgttgtcatgttatcacgttgcttttacatgttgtcatgttatcacgttgctttcacatgttgtcatgttatcacgttgcttttacatgttgtcatgttatcacgttgcttttacatgttttcacgttgcttttacatgttgtcatgttatcacgttgctttcacatgttgtcatgttatcacgttgcttttacatgttgtcatgttatcacgttgcttttacatgttgtcacatgttatcacgttgcttttacatgttgtcatgttatcacgttgcttttacatgttgtcatgttttcacgttgcttttacatgttgtcatgttatcacATTGCTTTAACACGTTGtcatgttatcacgttgctttAACATCTTGtcatgttatcacgttgcttttacatgttgtcatgttatcacgttgcttttacatgttgtcatgttatcacgttgcttttacatgttgtcatgttatcacattgcttttacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005616 lncRNA downstream 12822 36377993 ~ 36378281 (-) True G883746
TU1005580 lncRNA downstream 14013 36373714 ~ 36377090 (-) True G883715
TU1005607 lncRNA downstream 40670 36350138 ~ 36350433 (-) True G883741
TU1005603 lncRNA downstream 46317 36344559 ~ 36344786 (-) True G883738
TU1005602 lncRNA downstream 46634 36344225 ~ 36344469 (-) True G883737
TU1005626 lncRNA upstream 615 36393142 ~ 36393373 (-) True G883756
TU1005578 lncRNA upstream 2274 36394801 ~ 36395500 (-) True G883713
TU1005635 lncRNA upstream 36044 36428571 ~ 36486542 (-) True G883765
TU1005641 lncRNA upstream 49898 36442425 ~ 36445100 (-) True G883768
TU1005664 lncRNA upstream 137881 36530408 ~ 36564899 (-) True G883791
XM_036990179.1 mRNA downstream 49284 36303733 ~ 36341819 (-) True LOC110533773
XM_036990181.1 mRNA downstream 49285 36303733 ~ 36341818 (-) False LOC110533773
XM_036990180.1 mRNA downstream 64392 36303733 ~ 36326711 (-) False LOC110533773
XM_036990182.1 mRNA downstream 71489 36303733 ~ 36319614 (-) False LOC110533773
NM_001124693.2 mRNA downstream 95586 36293313 ~ 36295517 (-) True epd
XM_036990184.1 mRNA upstream 6413 36398940 ~ 36592948 (-) False LOC110533100
XM_036990185.1 mRNA upstream 6413 36398940 ~ 36592948 (-) True LOC110533100
XR_005053646.1 mRNA upstream 205845 36598372 ~ 36604502 (-) False LOC118966763
XM_021618288.2 mRNA upstream 225604 36618131 ~ 36634904 (-) False tmprss13b
XM_021618289.2 mRNA upstream 225604 36618131 ~ 36635441 (-) True tmprss13b
TU1005623 other downstream 189 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 510152 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 792018 35598317 ~ 35599085 (-) True G882971
TU1004310 other downstream 962895 35427249 ~ 35428208 (-) True G882631
TU1004213 other downstream 1069397 35320814 ~ 35321706 (-) True G882539
TU1006338 other upstream 266991 36659518 ~ 36665357 (-) True scn4bb
TU1006746 other upstream 924390 37316917 ~ 37318864 (-) True G884736
TU1007025 other upstream 1206106 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 1846423 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 2791171 39183698 ~ 39185494 (-) True rpl36a

Expression Profile