RNA id: TU1005407


Basic Information

Item Value
RNA id TU1005407
length 202
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G883555
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36393397 ~ 36393598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCCCATtaaccacaaacaaacaaagcaTCCTTTTTACCACAAACCAACCATCCCATTAACCATAAACCAACCATCCCATTAACCACAAACCAACCATCCCATTAACCATAAACCAACCATCCCATTAACCACAAACCAACCATCCCATTAACCATAAACAAACCATCCCATTAAACATAAACCAACCATCCCATTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005406 lncRNA upstream 79 36393073 ~ 36393318 (+) True G883554
TU1005403 lncRNA upstream 2475 36389300 ~ 36390922 (+) False G883552
TU1005404 lncRNA upstream 2475 36389925 ~ 36390922 (+) True G883552
TU1005401 lncRNA upstream 4650 36386432 ~ 36388747 (+) True G883550
TU1005327 lncRNA upstream 29190 36350497 ~ 36364207 (+) True LOC110533776
TU1005329 lncRNA downstream 1231 36394829 ~ 36395502 (+) True G883481
TU1005328 lncRNA downstream 3434 36397032 ~ 36400250 (+) True G883480
TU1005408 lncRNA downstream 6753 36400351 ~ 36400949 (+) True G883556
TU1005410 lncRNA downstream 8274 36401872 ~ 36402398 (+) True G883558
TU1005411 lncRNA downstream 9192 36402790 ~ 36403079 (+) True G883559
XM_036990183.1 mRNA upstream 16258 36350070 ~ 36377139 (+) False LOC110533776
XM_021618287.2 mRNA upstream 16258 36350071 ~ 36377139 (+) False LOC110533776
XM_021618286.2 mRNA upstream 89733 36301854 ~ 36303664 (+) True LOC110533775
XM_021618283.2 mRNA upstream 136773 36248874 ~ 36256624 (+) False LOC110533771
XM_021618291.2 mRNA downstream 252122 36645720 ~ 36650306 (+) True tmprss4b
XM_021618293.2 mRNA downstream 290268 36683866 ~ 36698702 (+) False LOC110533779
XM_036990190.1 mRNA downstream 290268 36683866 ~ 36698702 (+) True LOC110533779
LOC110533102 mRNA downstream 309120 36702718 ~ 36704449 (+) False LOC110533102
XR_005053648.1 mRNA downstream 318353 36711951 ~ 36713863 (+) True LOC110533781
TU1005301 other upstream 97850 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 706824 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 977159 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 1071596 35318500 ~ 35321801 (+) False mogat3b
TU1005835 other downstream 405787 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 456048 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 2361911 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 5318729 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 5318729 41712327 ~ 41717292 (+) False G889906

Expression Profile