RNA id: TU1005738


Basic Information

Item Value
RNA id TU1005738
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G883858
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36638479 ~ 36638687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacacacaagtgtaaaggaataaagaatatgtacataaagatatatgaatgagtgatggtacagagcggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagtttaaagtggctagtgatacatgtattacataaagatgcagtagatgatatagagtacagtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005726 lncRNA upstream 18282 36618880 ~ 36620197 (+) True G883847
TU1005471 lncRNA upstream 73982 36563883 ~ 36564497 (+) True G883616
TU1005411 lncRNA upstream 235400 36402790 ~ 36403079 (+) True G883559
TU1005410 lncRNA upstream 236081 36401872 ~ 36402398 (+) True G883558
TU1005408 lncRNA upstream 237530 36400351 ~ 36400949 (+) True G883556
TU1005739 lncRNA downstream 2305 36640992 ~ 36641207 (+) True G883859
TU1005744 lncRNA downstream 16009 36654696 ~ 36654921 (+) True G883864
TU1005757 lncRNA downstream 27951 36666638 ~ 36666901 (+) True G883877
TU1005768 lncRNA downstream 65247 36703934 ~ 36704237 (+) True LOC110533102
TU1005801 lncRNA downstream 91895 36730582 ~ 36730810 (+) True G883906
XM_036990183.1 mRNA upstream 261340 36350070 ~ 36377139 (+) False LOC110533776
XM_021618287.2 mRNA upstream 261340 36350071 ~ 36377139 (+) False LOC110533776
XM_021618286.2 mRNA upstream 334815 36301854 ~ 36303664 (+) True LOC110533775
XM_021618283.2 mRNA upstream 381855 36248874 ~ 36256624 (+) False LOC110533771
XM_021618291.2 mRNA downstream 7033 36645720 ~ 36650306 (+) True tmprss4b
XM_021618293.2 mRNA downstream 45179 36683866 ~ 36698702 (+) False LOC110533779
XM_036990190.1 mRNA downstream 45179 36683866 ~ 36698702 (+) True LOC110533779
LOC110533102 mRNA downstream 64031 36702718 ~ 36704449 (+) False LOC110533102
XR_005053648.1 mRNA downstream 73264 36711951 ~ 36713863 (+) True LOC110533781
TU1005301 other upstream 342932 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 951906 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 1222241 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 1316678 35318500 ~ 35321801 (+) False mogat3b
TU1005835 other downstream 160698 36799385 ~ 36801585 (+) True LOC110533788
TU1005877 other downstream 210959 36849646 ~ 36851153 (+) True G883966
TU1008492 other downstream 2116822 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 5073640 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 5073640 41712327 ~ 41717292 (+) False G889906

Expression Profile