RNA id: TU1005877


Basic Information

Item Value
RNA id TU1005877
length 1445
RNA type TUCP
GC content 0.53
exon number 3
gene id G883966
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 36849646 ~ 36851153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGTAGAATGTTGCTGGACAGCAGCCTCGAGCAGCCGCTCCAGAATGGTCCACTCCCCCATGGTCATTGAAAGACAGGTTCAGCCTAAGGAGGAACCGGGTctcctgggCTCAGCGCTCCTGACGGTCCCCAGCCAGAGGGGGCGCATCCGCCCCCGTCCCACACCAGCTTCTTCTGACCTCTACTCGTTGACCTGGCCGATGGTTCTCTATGGGAGTGACTGTGTGGGGGTGAACGTGTGTGCCCTCCCTCGGTCTGGTCCCGTTGTGCTCTTCTCTTCCTGGCAGAGGAGTGGTgccgtctgcctctcctcctctctcctcctctctccctccctccccctccctgtgtAGTGAAGCTTGTCTTCCCCCTGCTGCACCACTCAGATCTATGCTATAGCTCACTGTATGTGACAGCCAtgatcttgctctctctctccttctctcccttcACTCCCGCTCTTCCctgccctctctcgctctgtgctcCACCCTACCCCCAGGGCTGTCCTGGTACCTCAGATGCACTCCCTCCCATGAGTGTGAAGCTCTTGTCCTTGCATTGTGTTCAGTACTTTCCCTGTACCCTGCCTCTTCTAACCCAGAACACTACACACTGCACCCAGCTGACCTCTCCTCTGCACACCTCCacgcacagccacacacacacacacacacgctaaaacTCGAGGACCGACTTTCACTGCCTGAATCCTCCCTATATTTACTACACTATGATGTAAAGACACATTTGCACATAAAGCTCCTGCCATGCACTGTATTGCTTACTGAAATTCATAGTCATGGGAATGTTGGCTCCTCCACCCCCAATCACTACAAgaaacagttaaaaaaaaaaaagacaaaataaaCGCCGGCACACACACTCAATCAGCTGCCTTGCTGCATACACTTAGGCAGCGGTGCTGCAGACCTGCTGTCCTCTATCGTCCCTCTGGCTAATTCCAGCAGAGTCCTCCGCCTGGAGTCATGTCTGCCGCAGAGAGCAAGGATGAGTGGCTATCCTCCTGGAAAaccatcatctctctcttctctccctctctttgctctttctctctccttgctccctcctttcccctctccttatgTTTGTGTTCTGAGCTCAGTCTCTCTGATTACCTATCTCTCTCTAGGTCTCGCTCCttgttcctccctctcctttcagcactctctcactctctctggttCACTCTCTCACTCGATCTCTGTCAAACTACGTAAGCATGCCACATTCCCCCCTTCagacccctctctttctctctctcctccctccctatttCCTTATCTGGTAAATGTGCTAGGATTGCTAGTCTGATCGCTGGTTCACTTGTGCTTGCAAGAATGCCTCCCTTGTGCCGTCTCGATTCTCTCCTCCTGTTCTATTGGAATGAGGGATTCTACCGccacccttccttccttcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1005868 lncRNA upstream 11564 36835469 ~ 36838082 (+) False G883959
TU1005870 lncRNA upstream 11564 36835469 ~ 36838082 (+) True G883959
TU1005834 lncRNA upstream 46024 36802360 ~ 36803622 (+) True G883929
TU1005818 lncRNA upstream 72519 36763175 ~ 36777127 (+) True G883916
TU1005823 lncRNA upstream 73903 36772662 ~ 36775743 (+) True G883918
TU1005889 lncRNA downstream 20482 36871635 ~ 36892281 (+) True G883976
TU1005902 lncRNA downstream 47484 36898637 ~ 36899051 (+) True G883989
TU1005917 lncRNA downstream 71330 36922483 ~ 36922835 (+) True G884004
TU1005920 lncRNA downstream 75393 36926546 ~ 36996330 (+) True G884006
TU1005986 lncRNA downstream 238409 37089562 ~ 37091654 (+) True G884064
XR_002475041.2 mRNA upstream 48057 36799376 ~ 36801589 (+) False LOC110533788
XM_021618298.2 mRNA upstream 56567 36788460 ~ 36793079 (+) True LOC110533785
XR_005053648.1 mRNA upstream 135783 36711951 ~ 36713863 (+) True LOC110533781
LOC110533102 mRNA upstream 145197 36702718 ~ 36704449 (+) False LOC110533102
XM_021618293.2 mRNA upstream 150944 36683866 ~ 36698702 (+) False LOC110533779
XM_021618306.2 mRNA downstream 25522 36876675 ~ 36878956 (+) True mrpl48
XM_021618316.2 mRNA downstream 81096 36932249 ~ 36955772 (+) True LOC110533794
XM_021618318.2 mRNA downstream 137499 36988652 ~ 36997229 (+) True diablob
XM_036990195.1 mRNA downstream 149787 37000940 ~ 37070420 (+) False nectin3b
XM_036990194.1 mRNA downstream 149789 37000942 ~ 37055598 (+) False nectin3b
TU1005835 other upstream 48061 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 554099 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 1163073 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 1433408 35414975 ~ 35416238 (+) True G882624
TU1003912 other upstream 1527845 35318500 ~ 35321801 (+) False mogat3b
TU1008492 other downstream 1904356 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 4861174 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 4861174 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 4861174 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 5227062 42078215 ~ 42153778 (+) False G890228

Expression Profile