RNA id: TU1006746


Basic Information

Item Value
RNA id TU1006746
length 947
RNA type TUCP
GC content 0.52
exon number 8
gene id G884736
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37316917 ~ 37318864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattgttgaagggcccataagtaagcatttctctgttACTCCACACCTGTTTACAAAGTATGtcacataacatttgatttagaATAACTGTAGCAATATAGAAGCAGCCAGGTATCCAAGTAGACCATCTGTTTTTCTTTCTCACCGGGTCACTGGTATCAGCTGGCCCACAGGATGTGTTCAGGTGTTCAATTATTTCCTTTAGATCTTGGGACATCCTCTTCAGCTGGGCGTCCACGTTCTCTGCAAGCTTGTACGTTCTCTCGCGTTCCTCATCGGCATTCTGCATGTAGATGGTTCCACTCTGTTCTTTGACAGACTCCTCCAGTGGGGACAGCAGGTCCTCCAGTTCCTTCTGTTGTGACAGGATGAAGTCCAGCTCCTGGTCCTGCCTTCTTTGGTCCAGTTTCaccttctccatctccctgtgCAGTGATGTGATCTTCTCTCCATTCTCCACCAGCGTGCGGTCCCAGGCGTTGACCTGGGTAGCCTGCTGTAAGAAGTGCCTCTCCTGGTCCTCCAGCTCAAGACTCCACTTGTTGATGAGACCCTCTAGTTGGGCGTAGGACATCACTGGAGGAGCACTTGCTGTAACAGTAGTGATGGTTGTGGCTATTCCAGTGATTGGGACCGTTGAGCCGATGCCAGTGGCACCCGCAGGTTTCATACCCAGTGAAAAACCTGTTGTAGAGCCTGTGCCAGCTGGTGCTGTGGTGGTGGCAGTGACTGCTCCCAGGGGTTTGAGCATGAAGCCCAGGGTATTTCCTGCTGCCGATGTGGCAGCCGGGGCAGCTGAGGTGGGGGCAGCACCCAGAAAACCTGTGACTGCTGCCGTTGATGCTGGTACTGCAAAGAGAGAAGAACCTAATGAGGCCTGGGTAGCCGAGGCAGTTACAGCAGGGGCTGGAGTAGCTGAAGGTTTGACACCAAAAGCAAGTCCTCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006738 lncRNA downstream 10523 37306164 ~ 37306394 (-) True G884728
TU1006733 lncRNA downstream 15794 37300772 ~ 37301123 (-) True G884725
TU1006727 lncRNA downstream 23354 37293272 ~ 37293563 (-) True G884719
TU1006711 lncRNA downstream 60831 37255887 ~ 37256086 (-) True G884705
TU1006602 lncRNA downstream 194240 37119655 ~ 37122677 (-) True sdhaf1
TU1006745 lncRNA upstream 935 37319799 ~ 37320543 (-) True G884735
TU1006759 lncRNA upstream 23408 37342272 ~ 37342503 (-) True G884749
TU1006760 lncRNA upstream 24544 37343408 ~ 37343880 (-) True G884750
TU1006598 lncRNA upstream 80541 37399405 ~ 37402727 (-) False LOC110533817
TU1006597 lncRNA upstream 80944 37399808 ~ 37402727 (-) True LOC110533817
XM_021618336.2 mRNA downstream 68464 37202094 ~ 37248453 (-) False LOC110533809
XM_036990206.1 mRNA downstream 68464 37202094 ~ 37248453 (-) True LOC110533809
LOC110533810 mRNA downstream 72633 37243492 ~ 37244284 (-) True LOC110533810
XM_021618335.2 mRNA downstream 121461 37193113 ~ 37195456 (-) True LOC110533808
XM_021618332.2 mRNA downstream 131903 37178008 ~ 37185014 (-) False LOC110533807
XM_021618341.2 mRNA upstream 29608 37348472 ~ 37351594 (-) True chmp1b
XM_021618345.2 mRNA upstream 43325 37362189 ~ 37395820 (-) False LOC110533816
XM_021618344.2 mRNA upstream 43325 37362189 ~ 37395821 (-) True LOC110533816
XR_005053658.1 mRNA upstream 80931 37399795 ~ 37402750 (-) False LOC110533817
XM_036990210.1 mRNA upstream 199232 37518096 ~ 37704039 (-) False LOC110533823
TU1006338 other downstream 651560 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 924390 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 926003 36389997 ~ 36390914 (-) True G883753
TU1004896 other downstream 1435966 35880524 ~ 35880951 (-) True G883128
TU1004715 other downstream 1717832 35598317 ~ 35599085 (-) True G882971
TU1007025 other upstream 279769 37598633 ~ 37703786 (-) True LOC110533823
TU1007856 other upstream 920086 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 1864834 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 1898449 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 2536102 39854966 ~ 39893703 (-) True ksr1a

Expression Profile