RNA id: TU1007262


Basic Information

Item Value
RNA id TU1007262
length 317
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G885222
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37779027 ~ 37779343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctggtagtagcagtactaccagtagagctggtatgtgtctctatagacacgggccttacttttttaaaccatttatcaattttcaagcaaacggaatgagcagcagctatgttTGGCTACATATGGACCATTAGAGAGTagcggttaatgtgattggatgttaattatttgactaggctacctgtatttgacattgtgttgttatttcgctgaacactagatggtttaattttatttttggcagtgaaacgaagCTACTCAAgcaagaaaaaaacctcacccaaatgtatagccccgttggaaaatataaatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007250 lncRNA downstream 17438 37760438 ~ 37761589 (-) True G885210
TU1007063 lncRNA downstream 193602 37585216 ~ 37585425 (-) True G885033
TU1007061 lncRNA downstream 197282 37581524 ~ 37581745 (-) True G885031
TU1007060 lncRNA downstream 197835 37580990 ~ 37581192 (-) True G885030
TU1007056 lncRNA downstream 203814 37574952 ~ 37575213 (-) True G885026
TU1007285 lncRNA upstream 12029 37791372 ~ 37791611 (-) True G885245
TU1007293 lncRNA upstream 18337 37797680 ~ 37798016 (-) True G885253
TU1007514 lncRNA upstream 36558 37815901 ~ 37816145 (-) True G885451
TU1007515 lncRNA upstream 38547 37817890 ~ 37818123 (-) True G885452
TU1007517 lncRNA upstream 40559 37819902 ~ 37820195 (-) True G885454
XM_036990210.1 mRNA downstream 74988 37518096 ~ 37704039 (-) False LOC110533823
XM_036990211.1 mRNA downstream 74988 37518096 ~ 37704039 (-) False LOC110533823
XR_005053658.1 mRNA downstream 376277 37399795 ~ 37402750 (-) False LOC110533817
XM_021618344.2 mRNA downstream 383206 37362189 ~ 37395821 (-) True LOC110533816
XM_021618345.2 mRNA downstream 383207 37362189 ~ 37395820 (-) False LOC110533816
XM_021618357.2 mRNA upstream 64191 37843534 ~ 37867857 (-) True LOC110533824
XM_021618362.2 mRNA upstream 119731 37899074 ~ 37914392 (-) False LOC110533826
XM_036990215.1 mRNA upstream 119731 37899074 ~ 37920271 (-) False LOC110533826
XM_021618363.2 mRNA upstream 119731 37899074 ~ 37920732 (-) False LOC110533826
XM_036990216.1 mRNA upstream 119731 37899074 ~ 37922886 (-) False LOC110533826
TU1007025 other downstream 75241 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 460163 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 1113670 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 1386500 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 1388113 36389997 ~ 36390914 (-) True G883753
TU1007856 other upstream 459607 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 1404355 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 1437970 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 2075623 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 2717371 40496714 ~ 40547367 (-) True LOC110533878

Expression Profile