RNA id: TU1007361


Basic Information

Item Value
RNA id TU1007361
length 1423
lncRNA type read_through
GC content 0.45
exon number 2
gene id G885318
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37936993 ~ 37959071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACTAAAtaaagctcaggtgcatcctgttccattgatcatccttgagatgtttctacaacttgattgtagtccacctttgctaaattcaattgattgtacctGATTTTGAAATTCACACCCGTCTATATTAAAAGGTCCcagttgacagtgcgtgtcagagcaaaaccaggtcgaatgaattgtctgtagagctccaagacagaattgtgttggggcacagatctggggaaaggtaccaaaaaaatgtctgtagtattgaaggtccccaagaacacagtggccttcattattcttaaatggaagatgtttggaaccaccaaaactcttcctagaactggcctcccggcaaaactgagcaatagggggagaagggccttgatcatgGAGGTGACcgagaatccgatggtcactctgacagagctcctctttggagatgggaaaaccttccagaaggacaaccatctctgcagcactccatcaatcaggcctttatggtagagtggccagacagaaaccactcctcagtaaaaggcacatgacagcccgcgtttgccaaaaggcacctaaaggaatctcagaacatgagaaacaagatactctggtctgatgaaagcaagcatacagccaagacaatgcaggagtggcttcgggacaagtctctgaatgtccttgagtggccctactagagcccggacttgaacctgattgaacatccctagagagacctgaaaatagttgtgcagcgacgctccccatccaacctgacagagcttgagaggatctgcagagaataatgggagaaactccccaaatacaggtgtaccaagcgtgtagctgttgaagcacctttggcagcgatttcaaagtactgagtaaacatACGTAACATAGTAATACATATGTAAAAACtgttaataaggctgtaacgtaacaaactgtggaataagtcaagcggtctgaatactttccaaagacaCTGTATTTATCCCCCCAAAAAGGTTGTAAAATaaattgttaaataaatgttcaacTTCTATGGCTGCTAAAGAATTGGATCAGAATTAGTTTCATCAATAAGGCTGTAATTTGCTCAGTCAACTAACAGATTGGATAATCAGGCCACAAGCTTAACTGCTTCAGTGGTTATTTCAGAGGAACTTTGTCCCTCCTCTGACATCTTTGATCTCCATGGAAACAACTGTGCCCTTTGTGGCAGTAACTCAATTTTCTATAGCTACTGGTTCCATCTTCTCGCTCCCTGCAGTAGGTACCAACTCTATTTCAGCCTCCTCCACTGCAGCGCCATTCATGAGTGGTTTAGCATTTTCGGCTGTGTGGCTAACCGATACAGGAGACAAAGAGGTTTGTTCAGGTGGCGTGCCTGTTGGACTGCCCTGATCTGCCAGAACCCCATCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007313 lncRNA upstream 115939 37820772 ~ 37821054 (+) True G885273
TU1007309 lncRNA upstream 122164 37814630 ~ 37814829 (+) True G885269
TU1007305 lncRNA upstream 130042 37806653 ~ 37806951 (+) True G885265
TU1007292 lncRNA upstream 138947 37797806 ~ 37798046 (+) True G885252
TU1007284 lncRNA upstream 145329 37791447 ~ 37791664 (+) True G885244
TU1007406 lncRNA downstream 7255 37966326 ~ 37966529 (+) True G885356
TU1007412 lncRNA downstream 32369 37991440 ~ 37992661 (+) True LOC110533830
TU1007429 lncRNA downstream 41285 38000356 ~ 38000583 (+) True G885379
TU1007432 lncRNA downstream 42642 38001713 ~ 38055687 (+) True G885381
TU1007465 lncRNA downstream 88308 38047379 ~ 38048064 (+) True G885413
XM_021618359.2 mRNA upstream 40618 37876928 ~ 37896375 (+) False LOC110533825
XM_021618358.2 mRNA upstream 40618 37876934 ~ 37896375 (+) True LOC110533825
XR_005053659.1 mRNA upstream 226310 37704049 ~ 37710683 (+) False LOC118966772
XR_005053657.1 mRNA upstream 418484 37510479 ~ 37518509 (+) True agtr2
XM_036990213.1 mRNA upstream 419877 37497022 ~ 37517116 (+) False agtr2
XM_021618370.2 mRNA downstream 14268 37973339 ~ 37992659 (+) False LOC110533830
XM_021618371.2 mRNA downstream 43528 38002599 ~ 38039709 (+) False msna
XM_021618372.2 mRNA downstream 57548 38016619 ~ 38039709 (+) True msna
XM_036990217.1 mRNA downstream 100691 38059762 ~ 38063313 (+) True LOC110533834
XR_005053660.1 mRNA downstream 158083 38117154 ~ 38117987 (+) False LOC110533835
TU1005877 other upstream 1085840 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 1135408 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1641446 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 2250420 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 2520755 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 796438 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 3753256 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 3753256 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 3753256 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 4119144 42078215 ~ 42153778 (+) False G890228

Expression Profile