RNA id: TU1007600


Basic Information

Item Value
RNA id TU1007600
length 1414
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G885526
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37991232 ~ 37992645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTTGAGGAAACAAACACACTTGGTCATAGAGACTTACATTTTGTTTGAGCCAACAGACCCAAAGAGTTCAGTGTTTTTGTCTTTTTGTAATTGTTTTCTTActtaaaacaatttaaaagcaatgcgtTTCATTCAACATAGAATAGAACAAACTACTGCAGCTTATAACACATGACCTAGTTGTCAACTCACTCCTATAACCCTTTTACATTGCAAAACCACAATACAAGACAGTTCAATTTAGCTTTAGGACATGAGACCTGAACTAATTCACAAATCTGACTTTGTAAGCGCATTTATCATTTATAGTAATAGCACACATCAATAATATTGTTTCTGAAGTAATTTGTAGTAAATCTCATAGTACCTGAGAATTGCTATTGTGGTGTATAAGAGAATTTACAATGTCAGGTGAGCTGGTCTATTTAGAACATTGATTCAAGGTTAATCTACACATTGACAATTATTTGTAGCATTTCAACCCTCTATCTGCTGTGTTCAATTCAAACAATAAAATCAACCGCAAGCCTAGTTGCTGAGACCACCAATATGAAGATAAAGAGTGAAATCAGTCATCACAAACATAGGCCTATCTTTTAAATTCAAATGTAATTACAAATGCTCAGGGCTAAAATAACATTTCTCATTTGAAACATAACTAAAACCAATATAATCTCACATGCTTTAAAATACTTAAGGCTAGATCAAGTGCCATTTGTGAGTGACAAATTTACCAAAGTAAACTATAAATCAATAAAGATATAATCTTGTTACCAAATAAAAGAGGGTTATTCATCAAATCCCTTTCCACACGTTTTACCCTTGTCCAATCAGAGGTAAAACAGATTACTTGTCTCAAATACTCACTTAATCATACTGACACACAGTCACTTGACTTTATTATATCAGTAGACTAAgagttgaatatattattatctgGGTAAAATCATTTTTTCTTTATAGAATTTAACAAATAACCCCCGAAGTTTCGTAACCCAAACAATTATGACTGGCATTTCAATCTATTCCGTTTTCTGTGAAGCAACTAAAATGTAGCCAGATTTGGCATGTTATTCAATGTCTACATGTCAATACATTTAAATACAGATGGTATCAATGCAGGAAAAGAGcagaaaatattatttttttatcaagCTGCTTGGGTTACAACACAGCAAAAAACTTTAATGCAACAAGTTTAATAGCACATTAAAACAGTACATTGAGTGGTAATTTtagtatacacagagagagagagaggacacaatgCTTACAGCTACACACAGGGTATCTGTGCACTTCTATGTAGCACGTAAGTGTCCCTGTAAATAAACTACTGTGCCcagtaagaaataatacataccAATGGGCTACTCCCAGTGACACATAGTGTCACAAACATTATGGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007584 lncRNA downstream 18917 37972088 ~ 37972315 (-) True G885515
TU1007580 lncRNA downstream 22207 37968811 ~ 37969025 (-) True G885511
TU1007517 lncRNA downstream 171037 37819902 ~ 37820195 (-) True G885454
TU1007515 lncRNA downstream 173109 37817890 ~ 37818123 (-) True G885452
TU1007514 lncRNA downstream 175087 37815901 ~ 37816145 (-) True G885451
TU1007606 lncRNA upstream 7951 38000596 ~ 38000908 (-) True G885532
TU1007607 lncRNA upstream 8496 38001141 ~ 38001341 (-) True G885533
TU1007611 lncRNA upstream 45464 38038109 ~ 38039668 (-) True G885536
TU1007646 lncRNA upstream 64085 38056730 ~ 38056983 (-) True G885569
TU1007649 lncRNA upstream 67539 38060184 ~ 38060465 (-) True G885572
XM_021618369.2 mRNA downstream 25426 37958407 ~ 37965806 (-) True mtmr8
XM_021618368.2 mRNA downstream 25427 37958407 ~ 37965805 (-) False mtmr8
XM_021618367.2 mRNA downstream 43352 37945479 ~ 37947880 (-) True asb12a
XM_021618366.2 mRNA downstream 43851 37945479 ~ 37947381 (-) False asb12a
XM_021618364.2 mRNA downstream 48180 37939057 ~ 37943052 (-) True amer1
XM_021618374.2 mRNA upstream 73161 38065806 ~ 38112815 (-) False arhgap20b
XM_021618373.2 mRNA upstream 73161 38065806 ~ 38112816 (-) True arhgap20b
XM_021618376.2 mRNA upstream 134781 38127426 ~ 38135731 (-) False LOC110533836
XM_021618377.2 mRNA upstream 134781 38127426 ~ 38135731 (-) True LOC110533836
XM_021618378.2 mRNA upstream 252371 38245016 ~ 38280006 (-) True LOC110533838
TU1007025 other downstream 287446 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 672368 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 1325875 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 1598705 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 1600318 36389997 ~ 36390914 (-) True G883753
TU1007856 other upstream 246305 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 1191053 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 1224668 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 1862321 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 2504069 40496714 ~ 40547367 (-) True LOC110533878

Expression Profile