RNA id: TU1008153


Basic Information

Item Value
RNA id TU1008153
length 208
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G886043
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38495497 ~ 38495704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATCACTCAATCATACCTGTCATCCACTTAAAAGCTTTGCAGGGGGCCTTCCCCACACTTGAATGCTTAGTGAAAACCAGTCTTCCCTTTGAAAAGACAAAAACACGACATCAGCCTCCTAATGATCCCGCTATTCCTGCTGCCTTATCTTCAGCAGGGTAATGACATTTCTGTTCACTTGATGTACACCACTTTTCATATGTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008146 lncRNA upstream 4137 38491146 ~ 38491360 (+) True G886036
TU1008142 lncRNA upstream 7176 38487936 ~ 38488321 (+) True G886032
TU1008137 lncRNA upstream 10930 38484334 ~ 38484567 (+) True G886027
TU1008136 lncRNA upstream 11527 38483766 ~ 38483970 (+) True G886026
TU1008128 lncRNA upstream 16008 38479239 ~ 38479489 (+) True G886018
TU1008370 lncRNA downstream 139912 38635616 ~ 38635926 (+) True G886254
TU1008372 lncRNA downstream 141154 38636858 ~ 38637078 (+) True G886256
TU1008393 lncRNA downstream 153341 38649045 ~ 38649578 (+) True G886277
TU1008401 lncRNA downstream 157834 38653538 ~ 38653895 (+) True G886285
TU1008440 lncRNA downstream 182905 38678609 ~ 38678834 (+) True G886323
XM_021618381.2 mRNA upstream 159208 38310821 ~ 38336289 (+) False LOC110533840
XM_036990218.1 mRNA upstream 159208 38310821 ~ 38336289 (+) False LOC110533840
XM_036990220.1 mRNA upstream 159208 38310821 ~ 38336289 (+) False LOC110533840
XM_036990219.1 mRNA upstream 159208 38328698 ~ 38336289 (+) True LOC110533840
XM_021618379.2 mRNA upstream 208837 38280338 ~ 38286660 (+) True LOC110533839
XR_002475183.2 mRNA downstream 238439 38734143 ~ 38743257 (+) True LOC110534919
XM_021618385.2 mRNA downstream 259739 38755443 ~ 38815017 (+) False LOC110533845
XM_021618386.2 mRNA downstream 261002 38756706 ~ 38815017 (+) False LOC110533845
XM_021618387.2 mRNA downstream 333914 38829618 ~ 38891890 (+) False LOC110533846
XM_021618388.2 mRNA downstream 333914 38829618 ~ 38891890 (+) False LOC110533846
TU1005877 other upstream 1644344 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 1693912 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 2199950 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 2808924 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 3079259 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 259805 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 3216623 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 3216623 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 3216623 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 3582511 42078215 ~ 42153778 (+) False G890228

Expression Profile