RNA id: TU1008879


Basic Information

Item Value
RNA id TU1008879
length 3009
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G886729
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38811888 ~ 38814988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGTGAGCAGGCACGGCTCCGCCCAAAATacaatagaaacagaaaacagatTACATATACAACTAGAAACACAGATATGGGATAATATTTGTTTTAGAACGGAATTAGTAAGCACAGTTTTAAAACAAATCTCaggaaaaaaaaaagttattagaACTAGTGCAAAAAGTTCTTAACATTAAAGCACAGTGTATAAAATGGCATAAGAAGTAGTCTCCTCACAGCATACAGGCTTAGGACACCAGTGTAGATTTATACCCCTTTTCCCTTCTCTGATTGAGGTACCAATCCTTTACATTCTAACGGATAAGCAACAGCGATGACTGACATAGGAGAGAGAAGGGTACAAGTGACCTTTTTGGAAATGGAGAGACCATACAATGTTACACACGTTAGTCATATAAGGCAGGCAAGATTTCCAATCCCAAGTTGCAGTTATCAACATTGTTGTCTCTTTTAGAGTGTTTGGCATCTTAAACCAGTTTATAATCAGCATGCTGACAATGTCCGTTAGATATTAAATGAAACAACACAGGCTGTCAAAAACAAAATATTGCACTTTTAGCAAAAGAAACGAGCAGTTTATCAGACTGACATGAGATTAGTTCTTACTAATTCATTGTGGGCATTAAAGGCTACAGtgatataattaagcaataaggcacgaggcggtgtggtatatagccaatatatattggctaagggctgttcttagggcctggatatagccatggtatattggccatgtaccacaaacGCCAGagttgccttattgctattataaactggttaccaacataattagaacagtacaaatatttttgggggcatattgtggtatacagtctgatataccacggctttcaaccaatcagccatcagggctcgaaccaccaatagtataatatattttattttagataAATAAATAATCTGAATCTCATGCATCTCATAGATCTCTGATTTGTTTATATTACTAAAATGCTCAGATATTCAAATCCAAGTTAAAttcatatacatactgtatacaataCTCTGTAAAAACCTGTGCTATGATATAGTTTTTCAATAGTAAAATAGTTAAGATAGTTTTGTTAGGACATAAACAATATGCCTGTATTCTGGTAGACCAAGGTCACATATAGTATCTGTTTGGGAGGTGAACCCAAGGAATACTTTGTAAGATAAAAAACTATTCACAATTCCTATTTGTGAATCAATTTGTCACATTGGAAGACagttattttatttcagcttccCAAATACAAGCCCAATTTTTACCAACTATTTGTAAGAATAATACACAAATTATGCCAGGAAAAGAGAGGTCAGAAGTATTCAATCCAAGAAATCAGAAACATATGAGAACCATTTATATAATCATGCTCTAGCTTGTCTTTACAAATAACAAAACCGCTTCCCAACAGATTGCCTATGAATAAATCAAGGTGGATCTTTTTCTATATCTCTAATATTTAGAAGTATATTTATAAAGTTTTGGTTCATTCCAAATACTGTAATCACTGTATTTCACCATGAATGTAATGAACACACAAGAAGACATTGAGGGCATAGACACATGCCTCAGTTTTTTGATGACGCGATGCATTCACATCTTGAACATTTCTTAAACATTCAGCCATGATAACATTCTGCTCCAATTATCACTCTGGGTCTTTGTTATGTGTAATACGTGGTAAATTGTCTGTTTTATGAGTAAGAAATGATTGGTGTAGTTATAATACAGACAGTCTTCCATTGCACAATCATGTGCCTTCTGTAAGCGATTAGAGACCCAGTGGGGGTTTCAACTCGTTTCAATCAGCTTTGCATAAACACATGTTCCTCCACAGCATTAGTAGTGTACTTCTGACATCTATCAAAAACAACATGGTTTACCTTTGATTAGGATCTGTAATCCAATACTTGCATGAACTGATTCTACTTGGTGTATGATAATGAGGGTAGTGGTACTGAGAATAAGAATAATATTTACTCTGAGCCAAACAAAGTATTGTTGTGCGTATTCTGTTAGCTTGGAAGATGTAATGGTCATCTGATTTGTGTTGGGTCATTTACATTATATTGCTGACTTCTTCactgtattcacacacacacacacacacacacacacacacacacacacatccagataAAAAAAATAGCATACGAGCCTGCAACTCATACTTTTCCCCACTGTGCAGTTCACAAACTCAACACCCAATGTCATACGTAAATCCCCAAAAACATCACTCAACTCATTAAATAGAGTAGTGATAAAACTTGAAAAAGGCCATTTGTACCCAAAACCTTCTCAGAAACAGCATACAGTACCTCTTTCAGTTACAAAATCGACGCTTCCTCTGGACCCTGGGATGATAGGAGACCCGCCTCTCTTTCCCTATGCCCTTTCATGTCCTCCTTACATGTGAGACATGTCTGGTTCTCAGTTTCGAAACCTCATCCACCTCCATACCTCTCTGTGTCGAGGTAGGGGAGGGCCCGTGCTTCGCCACTCCTCCGGTGTGGTGGAGGGTGAGGAGGTATACCGACCTGTAGCCTGCCCTGGAACGGTGTATAACCTCCTCATTGCTGATGTCCTGTGGAGGggactggatggagagagagggttataAACGCCTCACTCCTCAGGTACTGTGAAGGAAGGGGTCTCTGTAGACTGGAGGCAGGGAACAGTAGAAACTCTTGTTCATATTCAGTCACTCCTCTCGGGCAGAGCTCTCCTCCAGGGGCAGGGGTACCATGGCCTCCAGGCCCACAGTGCCACTGCTCTGGACAGTGGAGAAGGAGACGACAGTGTGCAGCAGGATGAGGACCAGAACACACAGTCTTAGTCTGCTGCTGCACAGCCGCGATGCAGCTGACACGGGCGGGGAGCTGCGCCGCTGCCATGACGACGACCCTGGAAGCTGTGTCAGGGCGCACGCCGCCCCCACAGAGGGGTCGCAGCCACTCCATCTGACATCACAACACTCTGGGTCTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008483 lncRNA downstream 100248 38711401 ~ 38711640 (-) True G886366
TU1008459 lncRNA downstream 116856 38694156 ~ 38695032 (-) True G886342
TU1008444 lncRNA downstream 127751 38683695 ~ 38684137 (-) True G886327
TU1008439 lncRNA downstream 133344 38678315 ~ 38678544 (-) True G886322
TU1008384 lncRNA downstream 168459 38643201 ~ 38643429 (-) True G886268
TU1008917 lncRNA upstream 43781 38858769 ~ 38880769 (-) True G886764
TU1008895 lncRNA upstream 91472 38906460 ~ 38908762 (-) True G886744
TU1008954 lncRNA upstream 102590 38917578 ~ 38919935 (-) True G886799
TU1009007 lncRNA upstream 190198 39005186 ~ 39022000 (-) True G886839
TU1009065 lncRNA upstream 314127 39129115 ~ 39129417 (-) True G886892
XM_021618384.2 mRNA downstream 194140 38545052 ~ 38617748 (-) True LOC110533842
XM_036989348.1 mRNA downstream 377487 38336407 ~ 38434401 (-) True LOC110533841
XM_021618378.2 mRNA downstream 531882 38245016 ~ 38280006 (-) True LOC110533838
XM_021618376.2 mRNA downstream 676157 38127426 ~ 38135731 (-) False LOC110533836
XM_021618398.2 mRNA upstream 113481 38928469 ~ 38945302 (-) False LOC110533851
XM_021618397.2 mRNA upstream 113481 38928469 ~ 38945732 (-) False LOC110533851
XM_036990225.1 mRNA upstream 113481 38928469 ~ 38945732 (-) True LOC110533851
XM_021618404.2 mRNA upstream 137620 38952608 ~ 38971312 (-) False LOC110533854
XM_021618402.2 mRNA upstream 137620 38952608 ~ 38971321 (-) False LOC110533854
TU1007856 other downstream 571329 38238950 ~ 38240559 (-) True G885767
TU1007025 other downstream 1108102 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 1493024 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 2146531 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 2419361 36391103 ~ 36392527 (-) True G883754
TU1009059 other upstream 368710 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 402325 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 1039978 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 1681726 40496714 ~ 40547367 (-) True LOC110533878
TU1012917 other upstream 3167713 41982701 ~ 41984417 (-) True G890360

Expression Profile