RNA id: TU1008690


Basic Information

Item Value
RNA id TU1008690
length 3680
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G886551
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39024327 ~ 39028030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaaacaagccatacaataTTATCAACTGTGCAACACCAACTTGCTGaattgaagaaaataaaaaactcAGCTCCCCAAtaagacactttaataatgtgttACAAAATACTTCTGTTTGTTTTACTTTAAAATCAtgtaacatacatacatacatacatacatacatacatattcaATCTATTTGACATCTTATAAAATAACTATATAATCTAAACATTTTTTGTACACTCTATAATACAATATTTTCAATTCGTTTTCTGCAATGAAATGGctgttatgtacagtaccaggTTCTTTTTTTGTTTGTGTCTTACTTCTTCCTGGCACATTTTATACAGTATTCATTCATGGACTCTCCACCCCATATACTGCAAGGATGCGCAGTCACTTCTAAAAGGTCAGAAATGTAAAAATGAAGGTCACAAAAAGAATGACACTTGATGAAGAATCAATGAACATAAAACTACAGTCAAACGGTAAAACACAAAGTGTGTATTCTACTGCTGGGGAGACAGATTCAACAGAATCAAAAGAGAGTAACAGTATCATTTGATCTAGTGTAGCAATCACAATTAACAAACAAATACCAATAAACATGAACTTTTGTATAAACTGAAGCAATACACAGCAAACACACAATGGCTATCAGTATGACCTCTGTGGGAAATCATCTGTGGGACTGGGTTAAAATGGAAATTGAATAACTGCCTGTGGGTGCAAATAGGGGCAACTAAAGCAAATTCTTTACACAAGATGGAGGATAAACTACAGTTAGCTAGAGAGCACACTGGACAATTTTGAGAACATGTTTTACTATTATTCTATGAGCTTGATAATTAAACATACACTACATGTTCCTTCAACCAGCTTCAAAAGGCAGTTTACTATATGATTGGGCATTGCGCACATTGAACCAACAACAGTTATTTGCTGAATGATAAGGTTGAGTGGAGGCCAACCCGGGTGACATATTTAGCTGACTATCAACAAACAGGATTTAAAAAGGATTGAGTATGTTAACAGGACCGTTTCTAAACGAATCTGCATCTAGGTCTTGAATAGAGTCACTGTTGTGTCTTTAGAGTAATAACAAACTGACACAGTAAAACTATGTTGAAACAATGTGTTCGTCATATCGCTTAAAACAATGTTTATGTTGGGCTGACCCCAGCAAGAGGCCAACAAGTTTTTACTGAATCTAATATGGCCCCCTTTCATGATGCCAGCATCACTCTGAGAAGAGTTGACCTGAGTCTTTAGTGTAGATTAAGCCATTCTAACAAAGTCTTCAGCAGATACAAGCTGTACCTCAGTAAAGATACTGCTGATATTCATGGTTGAAGGAATGTTAAAGATATTTCCATTTAATTCACATAGTACATTAGTTTATAGTATACAactatatctttttttttttttttttacatgagtACATACTTGCCTAGAACCATAATTTCAACAGCATAAATCATTTATTCTAAATTAAAACGACACATACTATAAGAATTCTAGAACTTTGTTTGATCTCTTCAACCAAGATGAACAGCACCAGTCTTCGTGAGAGTGACTATAACCGATGAAGTGATAGCGACTCAAtgtccacagcagagattggtaGGATTGTCATAAACGTTGTACAATTTAAGATTCTTATCACTCCACAATGCATTTCAACCTTCACTTCATGTGAAATGGCACATTTAGTTTAGATTAGAATTCCAATATGTTGTTCCATTTTGTTATGGCTAGTGAATGTAAAGGGAAATTGAGGCATACATTTCTCTCATTGTTTGACAGGATATAAGTGTTTCACAGTAGGACTTTCCCATTCAAATATTACAATATCTAATGGGGGTAGGGCAACTCAAATCAGATACCTACTGTTGTAGTTATTTGGGGAAAACGTATGGAacttgaagaaaaaaaagtaaaTAGGAAATACGTAGTATTATTTTAAGTGGTCAGTTTGATTGTAATTTACATTAGCAGGCCATTTGTCTCTGGTTAGTATTTTCTTCATACACAGTATTCCTAAAATCACCAGTGTATGGACATAATTACTCATTCATGGATAAATACACATAGTCTCTATAGTCCAAAAATCAACAACATTCTGCTGAATTGCAAAGATTACCAAATATAGACAATTAAACTGTAACCAACAAATTATGAAAAGTACAAATTGTTAATGTAATACTGAGAATATTTGTTTCCACAAATAACCTGAGAAAAGAATTACGTTATGAAAGTATACATAATCAATGTAAGACAACTACAATATATTAGTGATGTCTTCCTAATCATTGCAGCATCTGTTACACTTGATACAAAACAATGAGTTCTTAGGTGATTTGGGCAACAAACTACTGTTACTGTGCTGTTAGTAGCTGTTAATGCATTAAGACCTTATTGACTTATCTTTCAATGCCTGATTAAAAACACACCCAGTAGAACAGCTTAAATTTGTTTAGAAATGTAtgataaataaacaaacatgctATGGTAGTCTACTAATAAGGTTTGCTCTTTCCATTAAGGTGTGGATAAAGAATATGAAGcttgatttttatgaattattgaATACAAATGTTGCCATAACTAATTGGTACTATTGTTCGCTTTTAGAAAAAATCATGTCTAAATATTTGATTCTATAATGAAAATAATAGTAATTGTATGAGGACATTTGTTGCTGTGTCAgtcatgcaaaatattttttccccaAACATGGATTAATAGTGTTGAGTGGTGAATATACTTCAGTGTTTAATAATGATATCAACTATGTCTGGGAGTGGCTGACTGAATGTTTGATGAAAAGACGACACGTCCAACATCAAAATGAACCCCTTCCTTTATGTTTCCTTGAAACTACTGTTTCCTAATAGTCTTCCTATGTCAAAacaaatgtatgtatgtatgcacagCAAAACCATAACCTACAGACAAGTGTTTTTCATGTGAAATGAAGATGCAACTTTGAAGGAGTAAATGCTCACTGCAGGTGTTTACTCTCTGGAAACAACAGGACAGATGGTATGACCACAGTGCAGTCAGTGCACAACAAGGCTCACCTAACAACCTCTCTTTTTGTTGAAAACACATCTGCACGAAAACACACAGCAGCACCGTTTTCCTGTTGATTACTTTGATCGTTTTTTTTCCATCCAGCAGTGTCATGATGAAATATGACGAGTAAGCATGTCCTCCAGTAGCACAGTGGAGTGGGACAGAGATGTTGCTGCAGCGAATATTAGCATTTTCACCTTTTGTTTTTGCTGTGTAAAAAAAGCCACAATGGCTTCTTAAACAGTGAAGAACACAGCACAGCATGGGACCAAATATGCCTCTCTGTGTCTTCTATGCATCCCATAGAATTCTGCCACCAAACCTGTAACAATAAGTTTCAGAAAATATCTCACCACTGTTTGTGTCTTCGGTGCTACTGAGTGAGCATATTTCGGAAGTCTGAAAGGCTGCCAGGCTGGTTTTGGGAATGGTGGTGTTgccgctgttgctgctgttgttgctgctgttgttgctgctgttgttgctgctgttgttgcggttgttgttgttgctgcggTTGTTGTTGAATATAACTGACAGTACCTTGCTGTGGGACATTAGTAGTGTGGAAAAAAGCCTGAGTGGTTCCACTGTGTAAGAGTCCTTGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008650 lncRNA upstream 14643 39007525 ~ 39009684 (+) True G886521
TU1008601 lncRNA upstream 50913 38913515 ~ 38973414 (+) True G886474
TU1008494 lncRNA upstream 133960 38889403 ~ 38890367 (+) True LOC110533846
TU1008496 lncRNA upstream 305830 38718287 ~ 38718497 (+) True G886378
TU1008482 lncRNA upstream 313233 38710886 ~ 38711094 (+) True G886365
TU1008743 lncRNA downstream 65346 39093376 ~ 39098544 (+) True G886602
TU1008785 lncRNA downstream 128095 39156125 ~ 39156491 (+) True G886638
TU1008764 lncRNA downstream 155024 39183054 ~ 39183499 (+) False LOC110533860
TU1008757 lncRNA downstream 155784 39183814 ~ 39185062 (+) False LOC110533860
TU1008758 lncRNA downstream 155927 39183957 ~ 39185062 (+) True LOC110533860
XM_021618400.2 mRNA upstream 96067 38922342 ~ 38928260 (+) False LOC110533852
XM_021618399.2 mRNA upstream 96067 38922346 ~ 38928260 (+) True LOC110533852
XM_021618393.2 mRNA upstream 104214 38917732 ~ 38920113 (+) False LOC110533849
XM_021618416.2 mRNA downstream 115428 39143458 ~ 39147684 (+) False LOC110533859
XM_021618415.2 mRNA downstream 115430 39143460 ~ 39147684 (+) False LOC110533859
XM_036990227.1 mRNA downstream 115675 39143705 ~ 39147684 (+) True LOC110533859
XM_021618417.2 mRNA downstream 129781 39157811 ~ 39185057 (+) False LOC110533860
XM_021618420.2 mRNA downstream 199000 39227030 ~ 39234212 (+) False LOC110533863
TU1008492 other upstream 212188 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 2173174 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 2222742 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 2728780 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 3337754 35682655 ~ 35686573 (+) True LOC110533748
TU1012334 other downstream 2684297 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 2684297 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 2684297 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 3050185 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 3954652 42982682 ~ 43109676 (+) True G891133

Expression Profile