RNA id: TU1009740



Basic Information


Item Value
RNA id TU1009740
length 614
lncRNA type intronic
GC content 0.52
exon number 2
gene id G887530
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39583113 ~ 39586597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agacaggagagaaagacaggcaggagagatggacagacagaagagacagacagacaggagagacagactggagagacagacagatagacaggagagacagacaggagagacagacagacaggagagagagagacaggagagacagaaaggagagagagaaagacaggggaatcggaagagacagacaggagagacagacagtagagacagacagacaggagagacagacagacaggagagatagacagacaggagagagacaggagagacagacaggagagagagagagacaggagagacagacaggagagagagaaagacaggagagatagaagagacagacaggcgagacagacaggcagacagacagacagacaggagaggtagacagacaggaaagctagacagacaggagggacagacagacaggagagaccgacaggagagacagacaggcaggtgagatagacaggcagacagacagacagacaggagagacagacagactggagagacagacagacatacagacagacagacagacagacaggagagctagacagacaggagagacagacaggagagaccgacagacaggagagacagacagacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1009731 lncRNA downstream 2321 39580026 ~ 39580792 (-) True G887528
TU1009616 lncRNA downstream 220764 39359314 ~ 39362349 (-) True G887416
TU1009596 lncRNA downstream 273691 39307424 ~ 39309422 (-) True G887397
TU1009522 lncRNA downstream 361337 39221531 ~ 39221776 (-) True G887333
TU1009517 lncRNA downstream 366937 39215909 ~ 39216176 (-) True G887328
TU1009747 lncRNA upstream 13968 39600565 ~ 39601211 (-) True G887535
TU1009778 lncRNA upstream 54202 39640799 ~ 39641246 (-) True G887564
TU1009777 lncRNA upstream 54940 39641537 ~ 39641759 (-) True G887563
TU1009809 lncRNA upstream 148270 39734867 ~ 39735143 (-) True G887595
TU1009810 lncRNA upstream 149002 39735599 ~ 39735802 (-) True G887596
XR_005034354.1 mRNA downstream 383192 39197965 ~ 39199921 (-) True LOC110533862
XM_021618418.2 mRNA downstream 397535 39183759 ~ 39185578 (-) False rpl36a
LOC110534920 mRNA downstream 461275 39120154 ~ 39121838 (-) True LOC110534920
XM_021618413.2 mRNA downstream 487037 39024243 ~ 39096076 (-) False LOC110533857
XM_021618425.2 mRNA upstream 55391 39641988 ~ 39671372 (-) False LOC110533865
XM_036990247.1 mRNA upstream 55391 39641988 ~ 39671375 (-) False LOC110533865
XM_036990246.1 mRNA upstream 55391 39641988 ~ 39671377 (-) True LOC110533865
LOC110533866 mRNA upstream 84976 39671573 ~ 39748431 (-) True LOC110533866
XM_021618429.2 mRNA upstream 184693 39771290 ~ 39775768 (-) False LOC110533869
TU1009518 other downstream 365375 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 397619 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 1342554 38238950 ~ 38240559 (-) True G885767
TU1007025 other downstream 1879327 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 2264249 37316917 ~ 37318864 (-) True G884736
TU1010435 other upstream 268369 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 910117 40496714 ~ 40547367 (-) True LOC110533878
TU1012917 other upstream 2396104 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 2401114 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 2490144 42076741 ~ 42077947 (-) True G890403

Expression Profile