RNA id: TU1010440


Basic Information

Item Value
RNA id TU1010440
length 2554
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G888135
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39896854 ~ 39899447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcacaattggtggctgactaaatacttttttgccccactgtaagtaatCAAAAGAACAAGTATAAATAAATCCaagttccttatattaagcaaaccagatggcaccattttcttggatggaatatgaatgacattcTTCCAATATGCTGTGACAGGTCCCATGTTGCTCAGTTGGTGGAgcatggtagttagtcttgtcccatcgctgcaactcttgTATGGACTCGGGAgtggcgaaggtcgagagccatgcgtcccccgaaacacgaccccgccaagccgcTGATTCTTGACatactgcttgcttaacccgtaagccagccgtaccaatgtgtctaaggaaacactgtacaactggcgactgaagtcagcttgcaggctcccataaaggcctgattggtggagtgctgcagagatggtggtccttctggaaggttctcccatcttcacagaggaactctggagctctgtcagtgtccatcgggttcttggttacctccctgaccaaggcccttctcccgcgattgctcagtttagccgggcggctagctctagtaagagtcttggtggttccaaacttcttccatttaagaataatggaggccactgggttctTAGGGATCTTCGATGCTGCGTACATTTTTTTAgtgtccttccccagatctgtgcctcgacccaatcctgtatctgagctctacggacaattccttcaacctcatggcttggtttttgcactgacatacactgtcaactgtgggcattatatagacaggtgtgtgcctttgcaaatcatgttcaatcaattgaatttaccacaggtggactcagtCAAGTTGAACagacatctgaaggatgatcaatggaaacaggatgcacctgagcacaattttgaatctcatagcaaagggtctgaatatttatataaataaggtatttctttgttcttttttatatatatatatatatatataaattaacaAACATAAAaataacagtttttgctttgtcattatggggtattgtgtgtagattgagttttTGTATTTAATcacttttagaataaggatgtaacgtaagaAATTCTGGAAAAAGTGAAggtctgaatactctctgaatgcactgtatgtagctAGATATGTATAAATTGAAATGGTTTAAACGATTTATGATCTTGGGGATGTCACTACCATAAACTATGTAGATATGCCGTAGGTAGCAAGAAAATAATCAATGCTCAGGGAATCTTACTCAGCCGCAATTTTCTTGTTGTGTTTCACCCTCTTCTCTGCTATTTACCCCAACTGATTAAACACAGCTGAAAATATTCTGATATGTTCTGATATTCTATGTGTTCCATAGCCTAGTATGGTATAGTCCTTGTGGGTGGATTTTTTTTTGGACCAATTTATAATTGGTTTTGTTATTGCATTCTCTAGCTATACAAGAGAGAAAATATACAACTCTGTTGGCCTTTTCTGGAATACAATTCAGTACAAATGGCAAGACTTTTCAATATCAGTCCTACCCTGAAGAAAATACTGTTTTAGCAAATGCAATTTAGATGACAATGTCTTCTTATCAGACCACAAACCTAATTATCACCATGTCTAGCTGTAGCTTCCCTCTACTTTAACAAAGGTGAACTTATAAATTCTAGATTACTTGGCAACTCTTTATAGATTGTGTTACACTGAAATAGGATATGTTCTAGCTATACCACAACTAGAGGGTTACGTGTTCTTATGTAAGCCAGGATTTCATTTCAGTCtgagcattttttttatttgggtTTGCGTGATTGTTTAATTATTCTATTGTCCTGTGTGTTGGTCAGGGGGCACCTGCGACTTGGCATAATTATATTTTCTTCCATGTTACCGTAGCTCCCTCCAAAGGATTGTGTGTTACATGAATGTACAGTATAGAGCCAATGTTGATTAAAACATGAACCATTTAGAGTGCACGTCTTTGGGCTTGTTATCCTGAATGACTCACCATCAAACCAatcagaagacaaaatgtatttaatgctAATTTGTGATTCTTACTGTACGCATTATACTGTATTCCTCTATTTTCCTATTTGAAAAAGCATATATGCTGGGAACTTATCAGCCAATTACATTACAATTCATGTTATCAAATGCAGGTTGAAGAAAAAATGGATGTTAATGCTTTTTATGACTTGTACAATTGATTTGTATCTGTGGGAGACATGCTGGTGTAGATCTAGAGAAATGATCTAATCTAGTATTGTATAATCTCTTTACTTCTCAACCTAATTCAAAAATAGGAAAATATACACTTCTGTCTTTTGCATTTTCAAGATAACTTTCATAAACAAATATTTTCTTATACTGCTTTTGTTTGCTACGTGAATAATACAGTTGTGTTATACCCCGTGTTCTTGGTCTTTTTCTGTGTGACAGATGTTAAATCAACATAGAACTATAGTAGGGCATGTTATATCTGATGTATGTTGTATGTGCCAGTGTGTGCTCCCATGCTCTGTAGTTTAAAGACGAGTTCCCAGAATATAACATTGTGAGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1010457 lncRNA downstream 58981 39837604 ~ 39837873 (-) True G888141
TU1010401 lncRNA downstream 63041 39833427 ~ 39833813 (-) True G888113
TU1010400 lncRNA downstream 66580 39797121 ~ 39830274 (-) True G888112
TU1010399 lncRNA downstream 100489 39795348 ~ 39796365 (-) True LOC118966773
TU1009820 lncRNA downstream 147516 39749058 ~ 39749338 (-) True G887606
TU1010592 lncRNA upstream 174543 40073990 ~ 40075124 (-) True G888272
TU1010611 lncRNA upstream 207763 40107210 ~ 40107587 (-) True G888286
TU1010612 lncRNA upstream 208495 40107942 ~ 40108218 (-) True G888287
TU1010613 lncRNA upstream 208978 40108425 ~ 40108708 (-) True G888288
TU1010618 lncRNA upstream 215211 40114658 ~ 40114903 (-) True G888293
XM_021618434.2 mRNA downstream 3126 39843126 ~ 39893728 (-) False ksr1a
XM_036990249.1 mRNA downstream 88218 39789877 ~ 39808636 (-) True LOC110533108
XM_036990248.1 mRNA downstream 98928 39789877 ~ 39797926 (-) False LOC110533108
XR_005053661.1 mRNA downstream 100248 39795776 ~ 39796606 (-) False LOC118966773
XM_021618429.2 mRNA downstream 121086 39771290 ~ 39775768 (-) False LOC110533869
XM_021618436.2 mRNA upstream 4725 39904172 ~ 39919322 (-) False LOC110533871
XM_036990251.1 mRNA upstream 4725 39904172 ~ 39919322 (-) True LOC110533871
XM_021618437.2 mRNA upstream 21314 39920761 ~ 39964811 (-) False LOC110533872
XM_021618438.2 mRNA upstream 21314 39920761 ~ 39964811 (-) True LOC110533872
XM_036990273.1 mRNA upstream 597273 40496720 ~ 40546191 (-) False LOC110533878
TU1010435 other downstream 3151 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 679116 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 711360 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 1656295 38238950 ~ 38240559 (-) True G885767
TU1007025 other downstream 2193068 37598633 ~ 37703786 (-) True LOC110533823
TU1010822 other upstream 597267 40496714 ~ 40547367 (-) True LOC110533878
TU1012917 other upstream 2083254 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 2088264 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 2177294 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 3159563 43059010 ~ 43070158 (-) True LOC110533946

Expression Profile