RNA id: TU1011053


Basic Information

Item Value
RNA id TU1011053
length 248
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G888698
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40730898 ~ 40731145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgcaacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011050 lncRNA upstream 1935 40728704 ~ 40728963 (+) True G888695
TU1010989 lncRNA upstream 33225 40697384 ~ 40697673 (+) True G888636
TU1010949 lncRNA upstream 86311 40644369 ~ 40644587 (+) True G888596
TU1010291 lncRNA upstream 183150 40514160 ~ 40547748 (+) True G888021
TU1010300 lncRNA upstream 202582 40523500 ~ 40528316 (+) True G888029
TU1011101 lncRNA downstream 29704 40760849 ~ 40761130 (+) True G888742
TU1011114 lncRNA downstream 47410 40778555 ~ 40778835 (+) True G888755
TU1011138 lncRNA downstream 78951 40810096 ~ 40810491 (+) True G888779
TU1011149 lncRNA downstream 101076 40832221 ~ 40832487 (+) True G888789
TU1011169 lncRNA downstream 177606 40908751 ~ 40909981 (+) True LOC110533885
XM_021618452.2 mRNA upstream 234958 40479739 ~ 40495940 (+) True aatf
XM_021618454.2 mRNA upstream 255103 40470019 ~ 40475795 (+) False LOC110533880
XM_021618453.2 mRNA upstream 255103 40470020 ~ 40475795 (+) True LOC110533880
XM_021618450.2 mRNA upstream 337244 40391376 ~ 40393654 (+) True LOC110533877
XM_036990263.1 mRNA upstream 351976 40366196 ~ 40378922 (+) True LOC110533875
XM_021618461.2 mRNA downstream 130206 40861351 ~ 40879099 (+) True LOC110533884
XM_036990284.1 mRNA downstream 149965 40881110 ~ 40909990 (+) False LOC110533885
XM_036990283.1 mRNA downstream 149966 40881111 ~ 40909990 (+) False LOC110533885
XM_021618463.2 mRNA downstream 149969 40881114 ~ 40909990 (+) False LOC110533885
XM_036990286.1 mRNA downstream 178982 40910127 ~ 40917500 (+) False LOC110533886
TU1008492 other upstream 1918759 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 3879745 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 3929313 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 4435351 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 5044325 35682655 ~ 35686573 (+) True LOC110533748
TU1012334 other downstream 981182 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 981182 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 981182 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 1347070 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 2251537 42982682 ~ 43109676 (+) True G891133

Expression Profile