RNA id: TU1011704


Basic Information

Item Value
RNA id TU1011704
length 238
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G889300
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40942248 ~ 40942485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTTATGTCATCGGGTAGAACTTAACATTATGTTTTATACAAAACATAGACATgcaccattttcacatatgtagacactggtttggtgctgaAGAGAATAattatgaggttgaaaagtggcggaGTTTCCGTTTAAAAACATCTTAAGGCTCATACCTTTTTTTTCCATTTTCGcctaaaataacatacccaaatctaactgcctgtagctcaggacctgaagcaaggatatgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011613 lncRNA downstream 3879 40937421 ~ 40938369 (-) True G889210
TU1011603 lncRNA downstream 99322 40840140 ~ 40842926 (-) True LOC110533882
TU1011646 lncRNA downstream 111736 40830163 ~ 40830512 (-) True G889243
TU1011634 lncRNA downstream 124469 40817459 ~ 40817779 (-) True G889231
TU1011631 lncRNA downstream 130138 40811811 ~ 40812110 (-) True G889228
TU1011800 lncRNA upstream 143599 41086084 ~ 41086436 (-) True G889395
TU1012230 lncRNA upstream 689893 41632378 ~ 41632587 (-) True G889803
TU1012267 lncRNA upstream 716126 41658611 ~ 41658931 (-) True G889840
TU1012269 lncRNA upstream 718756 41661241 ~ 41661441 (-) True G889842
TU1012296 lncRNA upstream 738059 41680544 ~ 41680773 (-) True G889869
XM_036990281.1 mRNA downstream 88768 40840102 ~ 40853480 (-) False LOC110533882
XM_021618457.2 mRNA downstream 89531 40840102 ~ 40852717 (-) False LOC110533882
XM_021618458.2 mRNA downstream 89532 40840102 ~ 40852716 (-) False LOC110533882
XM_021618459.2 mRNA downstream 89532 40843907 ~ 40852716 (-) False LOC110533882
XM_021618460.2 mRNA downstream 89532 40843962 ~ 40852716 (-) False LOC110533882
XM_021618479.2 mRNA upstream 314339 41256824 ~ 41371473 (-) False LOC110533890
XM_021618480.2 mRNA upstream 314339 41256824 ~ 41371473 (-) False LOC110533890
XM_021618478.2 mRNA upstream 314339 41256824 ~ 41371993 (-) False LOC110533890
XM_021618475.2 mRNA upstream 314339 41256824 ~ 41441749 (-) False LOC110533890
XM_021618473.2 mRNA upstream 314339 41256824 ~ 41441750 (-) False LOC110533890
TU1010822 other downstream 394881 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 1048545 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 1724510 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 1756754 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 2701689 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 1040216 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 1045226 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 1134256 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 2116525 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 2251197 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile