RNA id: TU1012301


Basic Information

Item Value
RNA id TU1012301
length 722
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G889874
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41685430 ~ 41686151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacagtaataacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgggtacagtatgtacaaatgagatgagtatgtaaacaaagtggcatagtatagtataaagtggctagtgatacatgtattacataaggataccgtcgatgatatagagtacagtatatacgtatgcatatgagattaataatgtagggtaagtaacatttatataaggtagcattgtttaaagtggctagtgatatatttacatcatttcccatcaattcccattattaaagtggctggagttgagtcagtgtcagtgtgttggcagcagccactcagtgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttgatgtccttgatgatctttatggccgtcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgagggcggtgcagttgccataccaggcggtgatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1012297 lncRNA downstream 3078 41681001 ~ 41682352 (-) True G889870
TU1012296 lncRNA downstream 4657 41680544 ~ 41680773 (-) True G889869
TU1012269 lncRNA downstream 23989 41661241 ~ 41661441 (-) True G889842
TU1012267 lncRNA downstream 26499 41658611 ~ 41658931 (-) True G889840
TU1012230 lncRNA downstream 52843 41632378 ~ 41632587 (-) True G889803
TU1012304 lncRNA upstream 5076 41691227 ~ 41691445 (-) True G889877
TU1012460 lncRNA upstream 26162 41712313 ~ 41716383 (-) False LOC110533892
TU1012461 lncRNA upstream 26162 41712313 ~ 41716383 (-) False LOC110533892
TU1012464 lncRNA upstream 45577 41731728 ~ 41806709 (-) False LOC110533892
TU1012462 lncRNA upstream 101727 41787878 ~ 41793985 (-) True LOC110533892
XM_021617205.2 mRNA downstream 209451 41474987 ~ 41475979 (-) True LOC110533111
XM_021618473.2 mRNA downstream 243680 41256824 ~ 41441750 (-) False LOC110533890
XM_021618481.2 mRNA upstream 26160 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA upstream 100832 41786983 ~ 41806880 (-) False LOC110533892
XM_036989349.1 mRNA upstream 318675 42004826 ~ 42011726 (-) False LOC110533896
XR_002475184.2 mRNA upstream 659565 42345716 ~ 42353693 (-) False LOC110534921
XM_036990356.1 mRNA upstream 858460 42544611 ~ 42553273 (-) True LOC118966777
TU1010822 other downstream 1138063 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 1791727 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 2467692 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 2499936 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 3444871 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 296550 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 301560 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 390590 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 1372859 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 1507531 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile