RNA id: TU1012335


Basic Information

Item Value
RNA id TU1012335
length 4906
RNA type TUCP
GC content 0.42
exon number 2
gene id G889906
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41712327 ~ 41717292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTATTACAAAGTTCTTGAGGACTTATTACAAGGGATTTTTCCTTAACATGCGAAAACAGAACGAAACGGAACACATGGGAATTGAACAAACAGGTAGGATCCGACAATCCACTGTTCACGATAAACAGAAGTTCTGATAAAGCCCTCGGGAGCAGGGAGCCAGTGAATGACTACGGTGCAGGCATAGAACGGCCACATTCACACTGACTCAGCAAAGATCAATCCAACCAAGGCAAGATGTGCACATCTCAAGAAACACATTACAATGTTTATATGCCATCGGCTTTTGTCATACGTTTTAAAAAGCTTCACTTGCATGTACATAAAACTGTACAAAAACATGGCATCACAAGCATTTTGTCCTATATAAATATAACCAACAATTAGGATAACAACTTGGTACTCTCCTGCTAAGACATACTTTCAAGGTAGCTGTCTATATTTTAGTGTGAACTGTCTGTGACAGTGATGAAATGTGCAGTGAAGTGAATGTCAGCTCATTTGGGGAGAGGGGTCTTGGACAGAAACCAGCACTAACACCCCAGCAAAAACAGTAAACAATTTCTACCAATTATCTTTGGAATTCATGCTAAACTCATAGCCTGCCTGACAGCACACACGGGGACGTGTAGATCTACATATGTACAGTTCACCTTCAGGAGAGATTTGCCACATACAGCTCACTTTGATTTACTATGTCAGGAGGCTTAGTCTTATGTAACACCTGCAAGAAAAATCCTTTGCCCATTCTCCAGTGTTCCATAATGTCCCAACAATCTATAGCCACAATCACCATATAATACCACTACAGAGAGGCAGAGGATACTCAGGTGAACTTCACATGAAATAAAATATCAAAAATACAAAACTAAACAGGACTGGACATACCGTGGAGTGTATCAAAAGGTTTTCATGCTGTCCTCTACTTTGATAAAGGACAACAACCCTGCTTTCTCTAGAGAGCAGTCGACGCAAATAATAAATTCAGCATGAGTTCAAACGACAGGTAAAACCATGTGATTCAGTATATTCAACGACTCAGAACAATTGATATAGGCTGGAGAAAAGGAGTAGAGCACAGTTATTCAGGCtgggaaaaaaaacaagaaaacggATGCAAAGACCGGTGGTAAGGACTCAAACTCAGTGGTTTGGTTTTAATATGGTCTTGAGTCAAAACCAGTGATTCAGTCAAGCCAGAGAGAAGTGATTCAGACTCTCATTAGTAAAGAGATAAAACCAGTGATTCAGTCCAGCCAGAGAGAAGTGATTCAGACTCTCATTAGTAAAGAGATAAAACCAGTGATTCAGTCAAGCCAGAGAGAAGTGATTCAGACTCTCATTAGTAAAGAGATAAAACCAGTGATTCAGTCCAGCCAGAGAGAAGTGATTCAGACTCTCATTAGTAAAGAGATATAACTGGTGATTCAGTCAAGCCAGAGAGAAGTGATTCAGACTCTCATTAGTAAAGAGATAAAACTGGTGATTCATGCCAGATCACTCAGGGGATTCAGGCTCGAGTCAGAGGAGTCGGTGAATCGCAGTAAGTCAGACGAGTCAACGCCAGTGAATCTGAAAGGAGTCAGACATAGCGTAAGGAGCCAAAGCCAGTGATTGAGTCTGTGTGACGTTGGCTTTATCACTCATCGCCATCTTTCACACTTATCATTAATTCCAGGTCAGTGAACTCACCCGCAGCTGTAGCTCTGTAAAGCTGCTCTGTTCCACACTGAGAAGGGGTTGGGGGGGCCGCGAAGGGGCTTCATCACAGTGTATCATGACTCGCTGTATTTTATTTCAGCGGCTAAACCCTtgcaaaataaaaacatgtacaaGTTGCAGCTTCGCATCTACATTTTGTATGTGACTTAATCACACGTGTCCGAAAGCACGTTTTTTTCCACATGGGATTTTTTTCTCCGTTTTTTTATGTCGTAAAGGAATGGCTTTGAAAACAGCATAATGTGAATTTTTCCCTCAAGGCTAGGATAATCACCCACCTTATTTAGTCATTGCCATGTCCAGTAAATTCCATATGTTCTGAGTTTAATTATTCTACATGTGCTGCCGACGGCAGTGCGATGAGGTAAGTGCAGATAAAAATACCCCTTTTTAACTGATTTTGCGGATGGATTTGGATTATCTGGCTGCTGTGCTGTCCTCAGGGTGTGTGCTCAGTGCTCACATATGCCCTGGCTCAGGACTCATTACTCACAGTAATTAGGGGAGCGGAGCATCAATTCTAGGCCCTTCCACCCTTACTCAGACCATACCCACGGTTTCTCTCTCTATAGAAATACACTGAGGTCAAAACTAAGGTACAAATCTAATTGAATCAGTGTACAAATCAAAAAGCTATGAGTAATGCTACTGTGCTGCGAGGCGGGCTGGTGGCATAATCATCATCCAATTACATACTAACATTCCTGTGTCCTCCAGACGTCTGATTTTAAATGACTTTGAAATTGTGTATTTGTAAAAAATAGCTGCTGCAGCCTACAGGAATGTCCTCTATCTACATCATACTCAATTGAAGAGTGAGGAACAACAGCTAACAAGCTAATATAACCTGTTGGCCTCAATGAAAGTCAACTGGAAATGGACTGGAAATATGGGACAGTAAATACACTCCTGCTACCAATATTTAACTTTATTTGAAATGGCACCATTTCACCATTGTTTATAACATGCACCAATGGATGCAACAGGTCTATTCAAACAAAATGGTGACCAGAGTGTTTTCTAAGGCATTGACAACCGCTTCCcttctttgcaaattgaaatGTCTCTTAGTCCCAGATTACTGAAGCCGTTCAGGAGTCAGCCTGGGAATGTAAAAAGCTTAGTTTCTGTGAGACAGGGGAGTTCAGTCACAGCACTCTCAGTCACTTCAGTGGTTCTCAGGACTGAAGATTTCTATGTTGAAACTCGTGTGAATAACTCCTCATGCATTCATCAGAACCATTGAAATTCATGCGGATCGTGAAGAGAAACCCTAACGAGGCTGGAGACACAGGGTTGAAGTTAATGGTGACCTCTACGTGGAGAGCCACTGATTAGCATAGTGTTGTTTCGGCATAGGGAGGCCTAGCATTGGAGAGGAGCTTTTCACACATGACAGAGACTATAGTCTCATCTAGGTGGAGAACCACAGGTTCTAAAGGAACTAAAGTATTAAGGATTGGATAAAGGATTGGGAAAGGATTGGGAATGGTCAGTGCGACCAGGTGCGGTGGCCTCTAAGTGTACTGTTTCCAGGAAAAGAGACAAGTCACAGTGCTGAGACTCAGTGGAACACACATTGTCCGATTAAATGCTGCCACACAGCTCTCTTCACTGGCTGAAGAGCTCTCCAGAGAGCATGAGGTACAAGGCCATGGTTCTATCATGATTGGGGGTCACGGGTGTGTATGTGTAGAATTCAATCAAGAGCTTTTCCACACAGTCCGTCCAAGCTTTAGGGAAACATTTCAATCAAGTTTTAAACAGCAGCAGCTCAAATGAAAGAAAAGCTCAACTGCAAAAAATTCTGAGGCTATTGTTATCAGCTTGAGCCAGACAGAAATATATACAGGATACAGTGTACAccattcaaatgtatttacagcACTGTACATTAAGAAAGACCATTCAATTTGATTTGTAATCAAAAGCATTAAGTCTACCCTAGGGATGTATTGCCTGTCAGTTGAATGTTATCTGGTTATGGCACTAAAGCACTGATCACACATTAAAAGTTCCAGAGAACATTCCACAGGCTGGGGCTAAGCTAAGTAAATCAGTAGCGTTTGAGGGATTGattgtatatttttttgtgtgataTTACCACAAGTGTTCAACCAATGCTTTCAAATAAGCTGCATCAATAAATGAATACATTAACTAATTAATACATTATTGAACCaataaatatgtaaataaataaaataaattaactgAAAAACTCCTATTGCACATACCAATGGTTCCACGAATTACAGACCATATTTCCTACAGAACGGATATTTattcaaataaatggacatttcaGAGCCTCATGCTGAGTTCTTAACCAAATGGGAAGGTGCTAATTACCAGTTGTGAAGTtgtaaataccagttggatgcattcacatGCTTTAAATCTTTTGAAAAATGCAGATTGGCTAAAGGCCAACAAGCTGCTTCAACCATAAACTCAAAGTACAGCTATCATGcgtgtaaacaaactatagtgttAAAAAACCATATGAATAGATTGCTTTTTATAAATACTATTGtgttgttgcatttaactgccgAAAATGCTGTTATCAAGGTAATTTCCTTAGTAAGTGACAGAGGTGAGCATGTGGGAGAAGTCGGAGTTTAGGGATGATAGATgtgtttcccactagtaattaccagtggAGGGGCGTTCAAGACGATTTTTACCAATCTTATGAGGTAATTACCACCTTCCCACTTTGTTATGAATGCAGCATAAGAGCATGTTTCTTTTTATAAAGTGGGTGTGTCTCTGTGGCTCCTCTATCTGTGCACCAATCAGACATGGGAGATGGGGCTTTCTCACAGGTAGATCTCTCGTTTGGGGGTGTGGCTAGGAGGGGAGGTGGACGGGAACTCGGTGGCCACGCTCAGGGGCACCTCCTCCAGGGGAAAGTCCTGACTTGGGGCGTGGCCGCTGTTGGAATAGGCACTCCGGGAAGGTGGAAGGTGGGCTCGGTGCTCCTCTCCACCCAGCCTGGCGCTCCCGTTGGCCAAGCGGCCCAGGCTGCCTCTCTCCTGGTAAGGCACGAAGGTGGAGAGTTTAGGGGGGTTTCTGGTCTTGCGCACTGGGGAGGGCTGCCCAGGCATCCAGCAGGCGTCAGAGTGGCCCAGCTCGCTGCACTCTTGAGTACAGTTCCCCGTCATTGCCACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1012300 lncRNA upstream 26241 41685420 ~ 41686086 (+) True G889873
TU1012294 lncRNA upstream 31461 41680543 ~ 41680866 (+) True G889867
TU1012280 lncRNA upstream 40326 41671678 ~ 41672001 (+) True G889853
TU1012252 lncRNA upstream 60955 41651168 ~ 41651372 (+) True G889825
TU1012232 lncRNA upstream 77888 41634232 ~ 41634439 (+) True G889805
TU1012338 lncRNA downstream 906 41718198 ~ 41718397 (+) True G889907
TU1012343 lncRNA downstream 5423 41722715 ~ 41723075 (+) True G889912
TU1012559 lncRNA downstream 153467 41870759 ~ 41870964 (+) True G890118
TU1012585 lncRNA downstream 257303 41974595 ~ 41975201 (+) True G890140
TU1012629 lncRNA downstream 260127 41977419 ~ 41977677 (+) True G890184
XR_005053664.1 mRNA upstream 308185 41401490 ~ 41404142 (+) True LOC118966775
XM_036990290.1 mRNA upstream 472199 41029731 ~ 41240128 (+) False LOC110533888
XM_021618482.2 mRNA downstream 236915 41954207 ~ 41966800 (+) True LOC110533893
XM_036990294.1 mRNA downstream 261993 41979285 ~ 41984408 (+) False LOC110533894
XM_021618484.2 mRNA downstream 262104 41979396 ~ 41984408 (+) False LOC110533894
XM_021618483.2 mRNA downstream 262105 41979397 ~ 41985398 (+) False LOC110533894
XM_021618486.2 mRNA downstream 262597 41979889 ~ 41984408 (+) True LOC110533894
TU1008492 other upstream 2900188 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 4861174 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 4910742 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 5416780 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 6025754 35682655 ~ 35686573 (+) True LOC110533748
TU1012699 other downstream 360923 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 1265390 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 1379428 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 1817024 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 1817024 43534316 ~ 43600230 (+) True G891741

Expression Profile