RNA id: TU1012952


Basic Information

Item Value
RNA id TU1012952
length 2091
RNA type TUCP
GC content 0.46
exon number 1
gene id G890385
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41987711 ~ 41989801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTAATACATCTCATACAAAATGGTGACAAGATGAATAGATctaatccagaaaatgtcataacATGGGCGGCTTTTGATGTTCAAAAGACATCACATTCATAACTTGATAAAATAGCTCACTGTGCCCCGAAAGGGGCTACATAGAACCATCCCATTCTTACGTGCCAGATCCAGACAATAGTCCCCACCCCAATAGCTCACATTCAGGctgacaaaatatatttttttagacaCCGCAAGCCACAAAGGCCCCCAAACCAACATCCAGTACCTCTGACCAAAATGTTCCGTGACTAAATCCTTTCGGGCAGGGAGAAACAGAGCCAGGCAGGGCTGTGTCAAACCTAcagataactgccaaaataaagggaacactaaactAAAGCGTCTTAATAGGTCGCCGGACCAcaacgagccagaacagcttcaatgcgcattggcatagattctacatggGTCTGGAagtctattggagggatgtgacaccattatTACACGAGAAATGCAATCATTGTGTTTTGTTGGACATGGTGGTGAAAAACACCATCTCGggcaccgctccagaatctcccataagtgttcagttgggttgagatctggtgactgagacggctatggcatatggtttacattgttttcatgctcatcaaaccatttagTGCCCACTCATACCTTGTGGATGGgtgcattgtcatcctatgggggcatagccatggtagcccaAATAATCGGCAACTGGGcttgcccagcatttttatacgtGACCATAAGCATATGAATTCTTAGgagccacacctgtgtggaaccacctgctttcaatagactttgtatccctcatttgctatattttggcagttacctacagtggggagaacaagtatttgttttcctacttacaaagcatgtaattTTTATCATCATAAGGTACACTGTGAGATGGAAAATTGTGAGACTGAAAAttaaacaaaatccagaaaatcaaattgtatgatttttaattaatttgcattttattgcatgacataagtatttgatcacctaccaaccagtaagaattccagctctcacagacctgttagtttttctttaagccCTCCCGTTCTCAAGTCATTacctgcacctgtttgaactcattacctgtgtaaaagacacctgtccacacactaaatcagactccaacctctccacaatggtcaAGACCAgatagctgtgtaaggacatcagggataaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcatcgatgatcatgaggaaggtgaggatcagcccagaaccacacggcaggacctggtcaaatgacctgaagagaactgggaccacagtctcaaagaaaaccattagtaacactacCCGTcgtggattaaaatcctgcagggcACGCAAGGTGCCCCTGCTCAAACCAGCGCATGttcaggcccatctgaagtttgccaatgaccatctgaatgatccagaggaggaatgggagaaggtcatgtggtctgattagACAAAAATAgcgctttttggtctaaactccactcgccgtgtttggaggaagatgaaggatgagtacaaccccaagaacaccatcccaaccgtgaagcatggaggtggaaacattctttggggatgcttttctgcaaaggggacaggacgactgcaccgtattgaggggaggatggatggggccacgtatcgcaagatcttggccaacaacctccttccctcagtaaaagcattgaagatgggtcgtggctgggtcttccagcatgacaacgacccgaaacacacagccagggcaactaaggagtggctctgtaagaagcatctcaaggtcctggagtggcctagccagtctccagacccaatagaaaatcttgagggagctgaaagtccgtattgcccagcgacagccccaaaacctgaaggatctggagaaggtcggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1012950 lncRNA downstream 8421 41979085 ~ 41979290 (-) True G890384
TU1012942 lncRNA downstream 16516 41970956 ~ 41971195 (-) True G890377
TU1012939 lncRNA downstream 20862 41962712 ~ 41966849 (-) True G890374
TU1012926 lncRNA downstream 41920 41945575 ~ 41945791 (-) True G890367
TU1012913 lncRNA downstream 62463 41924937 ~ 41925248 (-) True G890356
TU1012948 lncRNA upstream 16208 42006009 ~ 42006456 (-) True LOC110533896
TU1012958 lncRNA upstream 17886 42007687 ~ 42007887 (-) True G890390
TU1012961 lncRNA upstream 20178 42009979 ~ 42010456 (-) True G890393
TU1012963 lncRNA upstream 26045 42015846 ~ 42017472 (-) True G890395
TU1012973 lncRNA upstream 26878 42016679 ~ 42022399 (-) False G890396
XM_021618481.2 mRNA downstream 180831 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA downstream 180831 41786983 ~ 41806880 (-) False LOC110533892
XM_021617205.2 mRNA downstream 511732 41474987 ~ 41475979 (-) True LOC110533111
XM_021618476.2 mRNA downstream 545961 41256824 ~ 41441750 (-) False LOC110533890
XM_036989349.1 mRNA upstream 15025 42004826 ~ 42011726 (-) False LOC110533896
XR_002475184.2 mRNA upstream 355915 42345716 ~ 42353693 (-) False LOC110534921
XM_036990356.1 mRNA upstream 554810 42544611 ~ 42553273 (-) True LOC118966777
LOC110533933 mRNA upstream 584972 42574773 ~ 42583308 (-) True LOC110533933
XM_036934573.1 mRNA upstream 599780 42589581 ~ 42593111 (-) True LOC110534922
TU1012917 other downstream 3294 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 1440344 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 2094008 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 2769973 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 2802217 39183698 ~ 39185494 (-) True rpl36a
TU1012992 other upstream 86940 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 1069209 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 1203881 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 1693773 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 1720684 43710485 ~ 43710969 (-) True G892965

Expression Profile