RNA id: TU1012985


Basic Information

Item Value
RNA id TU1012985
length 605
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G890399
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42052774 ~ 42062611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctagtggtaatggaggctagtggtgatggaggatagtggtgatggaggctaatggtgatgaaggctaatggtgatgaaggctagtggggATGGAGActcgtggtgatgaaggctagtggtgatggaggctagtgatgatggagGCTAATGGTGGTTTGTGGtaatgaaggctagtggtgatggaggctagtggtgaaaaaggctagtggtgatggaggctagtggtgatgaaggctactgatgatgaaggctagtggtgatggaggctagtggtgatggagactagtggtgatggaggatagTGGTAATGCaggctaatggtgatgaaggctaacggtgatgaaggctagtggagATGGAGACTCGTGGTGATGAAgcctagtggtgatggaggctagtgatgATGGAGGCTAATGGTGGCTCGTGGTGATgtaggctagtggtggctagtggtgatggagactagtggtggtggtggctagtggtggctagtggtgacgAAGGCTAGTgttggctagtggtgatgaaggctagtggtggctagctGTGATGGAGGctggtggtgatgaaggctagtggtgatggaggctagtggtgatgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1012979 lncRNA downstream 13928 42032449 ~ 42038846 (-) True G890396
TU1012983 lncRNA downstream 27061 42017592 ~ 42025713 (-) True G890397
TU1012975 lncRNA downstream 28466 42016679 ~ 42024308 (-) False G890396
TU1012973 lncRNA downstream 30375 42016679 ~ 42022399 (-) False G890396
TU1012981 lncRNA downstream 30375 42016679 ~ 42022399 (-) False G890396
TU1012987 lncRNA upstream 7975 42070586 ~ 42070838 (-) True G890401
TU1012995 lncRNA upstream 25342 42087953 ~ 42089376 (-) True G890405
TU1013042 lncRNA upstream 91928 42154539 ~ 42154843 (-) True G890448
TU1013044 lncRNA upstream 95592 42158203 ~ 42158495 (-) True G890450
TU1013050 lncRNA upstream 214171 42276782 ~ 42291152 (-) True G890455
XM_036989349.1 mRNA downstream 41048 42004826 ~ 42011726 (-) False LOC110533896
XM_021618481.2 mRNA downstream 245894 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA downstream 245894 41786983 ~ 41806880 (-) False LOC110533892
XM_021617205.2 mRNA downstream 576795 41474987 ~ 41475979 (-) True LOC110533111
XM_021618477.2 mRNA downstream 611024 41256824 ~ 41441750 (-) True LOC110533890
XR_002475184.2 mRNA upstream 283105 42345716 ~ 42353693 (-) False LOC110534921
XM_036990356.1 mRNA upstream 482000 42544611 ~ 42553273 (-) True LOC118966777
LOC110533933 mRNA upstream 512162 42574773 ~ 42583308 (-) True LOC110533933
XM_036934573.1 mRNA upstream 526970 42589581 ~ 42593111 (-) True LOC110534922
XM_021618523.2 mRNA upstream 545976 42608587 ~ 42616547 (-) True LOC110533934
TU1012952 other downstream 62973 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 68357 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 1505407 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 2159071 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 2835036 39217313 ~ 39217738 (-) True G887329
TU1012992 other upstream 14130 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 996399 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 1131071 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 1620963 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 1647874 43710485 ~ 43710969 (-) True G892965

Expression Profile