RNA id: TU1013178


Basic Information

Item Value
RNA id TU1013178
length 3330
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G890570
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42364876 ~ 42375397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgaagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactctcgtgtgtagacccctctctggtttagactctctggtgtagattctcttgtgtagactctctggtgtaaatctgaagcaggtagacccctctctggtgtagactgtctggtgtagactctctggtgtagactctctgttgtagacccctctctggtgtagactatctgatgtagactctctggtgtagacccctctctggtgtagactctccgATGTAGAccctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagacgcTCGGATGTAGACTCtttgatgtagactctctggtgtagactctcgtgtgtagacccctctctggtttagactctctggtgtagattctcttgtgtagactctctggtgtaaatctgaagcaggtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgttgtagacccctctctggtgtagactatatgatgtagactctctggtgtagacccctctctggtgtagactctccgATGTAGACCCGCTGGTGTAgactggtgtagactctctggtgtagactctctgatgtagactctctggtgtagacgcTCGGATGTAGACTCtttgatgtagactctctggtgtagactctctggtgtagtcCCTCTTGTGTAGACCCATCTCTGGtatagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagTAAGACCCCTCtttggtgtagactctctggtgtagactctctggtgtagactctctggtgtagacccctctctggtgtagactatctgatgtagactctctggtgtagacccctctctggtgtagactctccgATGTAGACCCtgtggtgtagactctctggtgtagactctctggtgtagactccctgatgtagactctctggagtagactctctggtgtagactctctggtgtagactctctgatgtacactctctggtgtagactctctggtgtagactctctggtgtagattctctggtataaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactctcgtgtgtagacccctctctggtttagactctctggtgtagattctcttgtgtagactctctggtgtaaatctgaagcaggtagacccctctctggtgtagactgtctggtgtagactctctggtgtagactctctgttgtagacccctctctggtgtagactatCTGATGTAGACTCACTAGTGTAGACcgctctctggtgtagactctccgATGTAGAccctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagacgcTCGGATGTAGACTCtttgatgtagactctctggtgtagcctCTCTGGTGTTGTCCCTCTTGTGTAGACCCATCTCTGGtatagactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagttagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtggaGACTCTCTGGTggagactctctggtgtagactctctgatgtagactctctggtgtagactctctgatgtagactctctgatgtagactctctggtgtagactctctgatgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtttagactctctggtgtagactctctggtgtagaccgtctggtgtagactctctggtgtagactctctggtgtagactttCTGATGTaaactctctggtgtagactctctgatgtatactctctggtgtagacccctctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactcctCTCTGGTGTAAACTCTCTGATGTAGaccactctctggtgtagactctctggtgtagacccctctctggtgtagactctctggtgtagacccctctctggtgtagactctctggtgtaaactCTCttatgtagactctctggtgtagacccctctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactcctCTCTGGTGTAAACTCTCTAATGTAGACcgctctctggtgtagactctctggtgtagacccctctctggtgtagactctctggtgtagaccccgctctggtgtagactctctggtgtaaactctctgatgtagactctctggtgtagacccctctctggtttAGACTGTCTGGTGTAGACCTCTCTCTGGtttagactctctgatgtagactctctggtgtagacccctcccgggtgtagactctctggtgtagactctctggtgtagactctctggtgtagactctctggtgtagattctctgatgtagactctctggtgtagacccctctctggtgtagactctctgatgtatacccctctctggtgtagtctctctggtgtagacccctctctggtgtagactctctggtgtagactctctgatgtagactctttggtgtagacccctctctggtgtagactctctgatgtagactctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013159 lncRNA downstream 6188 42358448 ~ 42358688 (-) True G890559
TU1013150 lncRNA downstream 12092 42352475 ~ 42352784 (-) True LOC110534921
TU1013142 lncRNA downstream 20533 42344055 ~ 42344343 (-) True G890542
TU1013138 lncRNA downstream 27656 42336952 ~ 42337220 (-) True G890538
TU1013125 lncRNA downstream 49311 42315325 ~ 42315565 (-) True G890526
TU1013207 lncRNA upstream 29850 42405247 ~ 42405467 (-) True G890588
TU1013214 lncRNA upstream 39059 42414456 ~ 42414751 (-) True G890595
TU1013225 lncRNA upstream 49250 42424647 ~ 42424913 (-) True G890606
TU1013400 lncRNA upstream 111119 42486516 ~ 42486861 (-) True G890768
TU1013394 lncRNA upstream 147268 42522665 ~ 42531025 (-) True G890762
XR_002475184.2 mRNA downstream 11183 42345716 ~ 42353693 (-) False LOC110534921
XM_036989349.1 mRNA downstream 353150 42004826 ~ 42011726 (-) False LOC110533896
XM_021618481.2 mRNA downstream 557996 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA downstream 557996 41786983 ~ 41806880 (-) False LOC110533892
XM_021617205.2 mRNA downstream 888897 41474987 ~ 41475979 (-) True LOC110533111
XM_036990356.1 mRNA upstream 169214 42544611 ~ 42553273 (-) True LOC118966777
LOC110533933 mRNA upstream 199376 42574773 ~ 42583308 (-) True LOC110533933
XM_036934573.1 mRNA upstream 214184 42589581 ~ 42593111 (-) True LOC110534922
XM_021618523.2 mRNA upstream 233190 42608587 ~ 42616547 (-) True LOC110533934
XM_036990358.1 mRNA upstream 274888 42650285 ~ 42707718 (-) True LOC110533935
TU1012992 other downstream 286929 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 375075 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 380459 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 1817509 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 2471173 39854966 ~ 39893703 (-) True ksr1a
TU1014179 other upstream 683613 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 818285 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 1308177 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 1335088 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1823999 44199396 ~ 44209264 (-) True LOC110533117

Expression Profile