RNA id: TU1013283


Basic Information

Item Value
RNA id TU1013283
length 409
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G890662
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42470592 ~ 42471000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcgtaaaccttcctggcctgaatgaggggtacctgagcctggggctggagatcgtaaaccttcctggcctgaatgaggggtacctgagcctggggctggagatcgtaaaccttcctggcctgaatgaggggtacctgagcctggggctggagatcgtaaaccttccaccgccatgcagAGAAAACTATTCGAAAGGGTTTAGAAACAGAGTATGGTGGGAGGTAtagtactgtcaactgtggatggTGTTGAAACCAGTTCTGGACCAAAGCAGAGTGGTGGAATGACACATTGTCCCAGATGACCATGTATTGCATCTGGTGCATTTCATTACCTGCTGTGACGTTGTGGTGCAATCGGTCCAAAAATGCGAgaatgtgaggtgtgtgtgaatgtctccctcggttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013275 lncRNA upstream 5043 42464566 ~ 42465549 (+) True G890654
TU1013216 lncRNA upstream 52693 42417647 ~ 42417899 (+) True G890597
TU1013213 lncRNA upstream 55618 42414492 ~ 42414974 (+) True G890594
TU1013212 lncRNA upstream 58414 42411858 ~ 42412178 (+) True G890593
TU1013193 lncRNA upstream 78575 42391660 ~ 42392017 (+) True G890583
TU1013342 lncRNA downstream 104299 42575299 ~ 42575505 (+) True G890714
TU1013343 lncRNA downstream 104655 42575655 ~ 42575931 (+) True G890715
TU1013344 lncRNA downstream 104989 42575989 ~ 42576305 (+) True G890716
TU1013364 lncRNA downstream 135081 42606081 ~ 42606395 (+) True G890733
TU1013365 lncRNA downstream 136999 42607999 ~ 42608350 (+) True G890734
XM_021618519.2 mRNA upstream 15515 42433880 ~ 42455077 (+) False LOC110533929
XM_036990351.1 mRNA upstream 15515 42451885 ~ 42455077 (+) True LOC110533929
XM_036989350.1 mRNA upstream 63510 42396319 ~ 42407082 (+) True LOC118966631
XM_036990323.1 mRNA upstream 164576 42295160 ~ 42306016 (+) False LOC110533900
XM_036990352.1 mRNA downstream 24202 42495202 ~ 42529359 (+) False LOC110533930
XM_036990353.1 mRNA downstream 24206 42495206 ~ 42531033 (+) False LOC110533930
XM_036990354.1 mRNA downstream 36806 42507806 ~ 42529359 (+) False LOC110533930
XM_036990355.1 mRNA downstream 44176 42515176 ~ 42529359 (+) True LOC110533930
XM_036990357.1 mRNA downstream 67416 42538416 ~ 42542432 (+) False LOC110533931
TU1012699 other upstream 316814 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 753300 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 753300 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 753300 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3658453 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 511682 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 625720 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 1063316 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 1063316 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 1071466 43542466 ~ 43555517 (+) True G891740

Expression Profile