RNA id: TU1013344


Basic Information

Item Value
RNA id TU1013344
length 317
lncRNA type antisense_over
GC content 0.58
exon number 1
gene id G890716
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42575989 ~ 42576305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACATACATACCAGGGCATGCTGTAGGCCTCAATACGCAGGTGGGCATCTCCTTCGTTCCTGATCACATACTCCACCCAGAAGGCATCACGCTCCAGGGCGTGGAGAAGCTGGTCCCGGTTTAGGGTGCAGAGTCTCTCCATGCTGCGCTGGTAAGAGGGGTTCTTCAGGATGTCTTGCAGCGCCTCCAGGAACTCCCATTCAGTGAGCATGGCTGCATCCAGCAACCGGGCCTCCCTGCTGGCTTTGCAAATGCACCAGGTTGTCCTGCTGGTCAAACCGCAGAGGCAGGCCCAGCACAGGGACACCTTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013343 lncRNA upstream 58 42575655 ~ 42575931 (+) True G890715
TU1013342 lncRNA upstream 484 42575299 ~ 42575505 (+) True G890714
TU1013283 lncRNA upstream 104989 42470592 ~ 42471000 (+) True G890662
TU1013275 lncRNA upstream 110440 42464566 ~ 42465549 (+) True G890654
TU1013216 lncRNA upstream 158090 42417647 ~ 42417899 (+) True G890597
TU1013364 lncRNA downstream 29776 42606081 ~ 42606395 (+) True G890733
TU1013365 lncRNA downstream 31694 42607999 ~ 42608350 (+) True G890734
TU1013378 lncRNA downstream 45134 42621439 ~ 42621668 (+) True G890747
TU1013382 lncRNA downstream 48342 42624647 ~ 42624856 (+) True G890751
TU1013387 lncRNA downstream 53716 42630021 ~ 42630246 (+) True G890756
XM_021618522.2 mRNA upstream 33132 42538416 ~ 42542857 (+) True LOC110533931
XM_036990357.1 mRNA upstream 33557 42538416 ~ 42542432 (+) False LOC110533931
XR_005034474.1 mRNA upstream 34004 42541915 ~ 42541985 (+) True LOC118937078
XM_036990353.1 mRNA upstream 44956 42495206 ~ 42531033 (+) False LOC110533930
XR_005053665.1 mRNA downstream 25107 42601412 ~ 42603732 (+) True LOC118966778
XM_036990359.1 mRNA downstream 163860 42740165 ~ 42811046 (+) False LOC110533114
XR_005053666.1 mRNA downstream 290463 42866768 ~ 42885650 (+) False LOC110533937
XM_036990360.1 mRNA downstream 311510 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA downstream 311513 42887818 ~ 42923475 (+) True LOC110533939
TU1012699 other upstream 422211 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 858697 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 858697 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 858697 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3763850 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 406377 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 520415 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 958011 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 958011 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 966161 43542466 ~ 43555517 (+) True G891740

Expression Profile