RNA id: TU1013388


Basic Information

Item Value
RNA id TU1013388
length 253
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G890757
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42630380 ~ 42630632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATAAGGTAAGACTAACCAACCACAGTACGTAAGTGGCAGTCTTTCTTCAAATGTATGTCAATGTATGTATCCACAGTTTTTTGGGGGGTTCATTAGGAGAGGAGTTGGAACTAAAAAGCCCTAAAAAGGCATAGTGCCTCAAGTACTTAGcatgatgtttatttttttatgtaatgTCTGCTCAGCCCACATGCCCACACGCTCTATATGTAATGTATacaatatctatatatttatactaCGATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013387 lncRNA upstream 134 42630021 ~ 42630246 (+) True G890756
TU1013382 lncRNA upstream 5524 42624647 ~ 42624856 (+) True G890751
TU1013378 lncRNA upstream 8712 42621439 ~ 42621668 (+) True G890747
TU1013365 lncRNA upstream 22030 42607999 ~ 42608350 (+) True G890734
TU1013364 lncRNA upstream 23985 42606081 ~ 42606395 (+) True G890733
TU1013389 lncRNA downstream 276 42630908 ~ 42631109 (+) True G890758
TU1013390 lncRNA downstream 950 42631582 ~ 42631909 (+) True G890759
TU1013391 lncRNA downstream 1404 42632036 ~ 42632383 (+) True G890760
TU1013392 lncRNA downstream 2121 42632753 ~ 42634163 (+) True G890761
TU1013497 lncRNA downstream 10330 42640962 ~ 42641266 (+) True G890857
XR_005053665.1 mRNA upstream 26648 42601412 ~ 42603732 (+) True LOC118966778
XM_021618522.2 mRNA upstream 87523 42538416 ~ 42542857 (+) True LOC110533931
XM_036990357.1 mRNA upstream 87948 42538416 ~ 42542432 (+) False LOC110533931
XR_005034474.1 mRNA upstream 88395 42541915 ~ 42541985 (+) True LOC118937078
XM_036990355.1 mRNA upstream 101021 42515176 ~ 42529359 (+) True LOC110533930
XM_036990359.1 mRNA downstream 109533 42740165 ~ 42811046 (+) False LOC110533114
XR_005053666.1 mRNA downstream 236136 42866768 ~ 42885650 (+) False LOC110533937
XM_036990360.1 mRNA downstream 257183 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA downstream 257186 42887818 ~ 42923475 (+) True LOC110533939
XR_005053667.1 mRNA downstream 321006 42951638 ~ 42956223 (+) True LOC118966779
TU1012699 other upstream 476602 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 913088 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 913088 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 913088 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3818241 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 352050 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 466088 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 903684 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 903684 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 911834 43542466 ~ 43555517 (+) True G891740

Expression Profile