RNA id: TU1013497


Basic Information

Item Value
RNA id TU1013497
length 305
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G890857
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42640962 ~ 42641266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaacacaTCTATGTAATTACCCTTTGACTTTTGAAGGCAGAGTTTTTGTTGTCAAATTACTCACTTCATGAGAAAAACATTACCTCACCTGAAATGTGTGGAGAAGATGGGGCTGTGTCTAGTTTTTTATTTATAGAGTAGCTTTTCGTTGACCACAGTCTATGTAAGGACTTCCCAAAATGAGAATTAAAAGAACTACCGTCATGTTATGTAGCAGTGCCGCTAGGTCTTAGGATAAAATGTCACCCCACGTTTGATGAAACGATAAAGCTCACTACTGTCATCTAGTGGGcagtatgaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013392 lncRNA upstream 6799 42632753 ~ 42634163 (+) True G890761
TU1013391 lncRNA upstream 8579 42632036 ~ 42632383 (+) True G890760
TU1013390 lncRNA upstream 9053 42631582 ~ 42631909 (+) True G890759
TU1013389 lncRNA upstream 9853 42630908 ~ 42631109 (+) True G890758
TU1013388 lncRNA upstream 10330 42630380 ~ 42630632 (+) True G890757
TU1013506 lncRNA downstream 4171 42645437 ~ 42646377 (+) True G890866
TU1013505 lncRNA downstream 7245 42648511 ~ 42649794 (+) True G890865
TU1013536 lncRNA downstream 58984 42700250 ~ 42705092 (+) True G890895
TU1013539 lncRNA downstream 65502 42706768 ~ 42707609 (+) True G890898
TU1013592 lncRNA downstream 79173 42720439 ~ 42722438 (+) True G890950
XR_005053665.1 mRNA upstream 37230 42601412 ~ 42603732 (+) True LOC118966778
XM_021618522.2 mRNA upstream 98105 42538416 ~ 42542857 (+) True LOC110533931
XM_036990357.1 mRNA upstream 98530 42538416 ~ 42542432 (+) False LOC110533931
XR_005034474.1 mRNA upstream 98977 42541915 ~ 42541985 (+) True LOC118937078
XM_036990355.1 mRNA upstream 111603 42515176 ~ 42529359 (+) True LOC110533930
XM_036990359.1 mRNA downstream 98899 42740165 ~ 42811046 (+) False LOC110533114
XR_005053666.1 mRNA downstream 225502 42866768 ~ 42885650 (+) False LOC110533937
XM_036990360.1 mRNA downstream 246549 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA downstream 246552 42887818 ~ 42923475 (+) True LOC110533939
XR_005053667.1 mRNA downstream 310372 42951638 ~ 42956223 (+) True LOC118966779
TU1012699 other upstream 487184 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 923670 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 923670 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 923670 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3828823 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 341416 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 455454 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 893050 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 893050 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 901200 43542466 ~ 43555517 (+) True G891740

Expression Profile