RNA id: TU1013506


Basic Information

Item Value
RNA id TU1013506
length 941
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G890866
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42645437 ~ 42646377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAATCATACAAATATATCTGTTTGTTTTATTGAATAATATTCCATAATAAGACATCTCCCCTTGAGTCAGGTGTGATTTACTATAGAAATGTACACAGGTCTGTGTCAAActcagagagagggtgaggggaggggcCGGTGTGTCTCtagttactgtggaggaggagTCAAGTTGGTAAATGGTGGTGCATGCATGCGTTGCAAAAATTCTCAAGTCAACCTGGATTTGTGGTCCTTATTGCTGGACTGTTTTGTAGCCTGTTAGTCCTCCTTGCTAACTGTTCATCCTTGCTGATGGCGGTTTGCCGTCCTTGCGAGCTGGTTGTCCCAATTGCAAGTTGTTAGTCCTATCTGCATTGTTCATACTCTCTAGTCTCAGTTTTTGTTGTGGCTGGAGTGTTAGTAGATCGAGCTCTGCTCACTTTGGCTCAGTTGCCATGTAGAGTCCCACCTGGTAAGTAACACCACAGCCCTTCTTTCATAGGCTCCATCAGTGCTAAGCCCTGTGTTATTACTTATGGCTCTTGTTGGAAGACGTCTGTTACTTTTGGAAGACGAGAGGAAAGGACTGAGATAAACCAAGAGCCGAGAGGAAAAAGGAGGGGGCGTAGTTTGTTTTTGGAAGACTTGTGTGACCATAACGCTGAGCCCAGTGGGTGTTGGGGAAGTCTGGTCATTGCTGGGAAAGGTCataactgactgacagacaggtgtTGGCTTTAGGAGGACAAATCTGGCCTTTGCATGTTTCCACATACTCTTTTGAACTTTGACAACATTTACAGTTTAGGGTTAAATCTCTGGCATACTGTAAATCATTCACACTGTGAGCTTCCACCCAGAGGATTTAGTTTGGGTGGAAGCTCACACTGCCTCATTTAGCATTCTGTGGGAACGATGAACCAGTGCCCTTACCACTTCACCCCAACACAACCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013497 lncRNA upstream 4171 42640962 ~ 42641266 (+) True G890857
TU1013392 lncRNA upstream 11274 42632753 ~ 42634163 (+) True G890761
TU1013391 lncRNA upstream 13054 42632036 ~ 42632383 (+) True G890760
TU1013390 lncRNA upstream 13528 42631582 ~ 42631909 (+) True G890759
TU1013389 lncRNA upstream 14328 42630908 ~ 42631109 (+) True G890758
TU1013505 lncRNA downstream 2134 42648511 ~ 42649794 (+) True G890865
TU1013536 lncRNA downstream 53873 42700250 ~ 42705092 (+) True G890895
TU1013539 lncRNA downstream 60391 42706768 ~ 42707609 (+) True G890898
TU1013592 lncRNA downstream 74062 42720439 ~ 42722438 (+) True G890950
TU1013624 lncRNA downstream 94014 42740391 ~ 42770217 (+) False LOC110533114
XR_005053665.1 mRNA upstream 41705 42601412 ~ 42603732 (+) True LOC118966778
XM_021618522.2 mRNA upstream 102580 42538416 ~ 42542857 (+) True LOC110533931
XM_036990357.1 mRNA upstream 103005 42538416 ~ 42542432 (+) False LOC110533931
XR_005034474.1 mRNA upstream 103452 42541915 ~ 42541985 (+) True LOC118937078
XM_036990355.1 mRNA upstream 116078 42515176 ~ 42529359 (+) True LOC110533930
XM_036990359.1 mRNA downstream 93788 42740165 ~ 42811046 (+) False LOC110533114
XR_005053666.1 mRNA downstream 220391 42866768 ~ 42885650 (+) False LOC110533937
XM_036990360.1 mRNA downstream 241438 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA downstream 241441 42887818 ~ 42923475 (+) True LOC110533939
XR_005053667.1 mRNA downstream 305261 42951638 ~ 42956223 (+) True LOC118966779
TU1012699 other upstream 491659 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 928145 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 928145 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 928145 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3833298 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 336305 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 450343 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 887939 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 887939 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 896089 43542466 ~ 43555517 (+) True G891740

Expression Profile