RNA id: TU1014073


Basic Information

Item Value
RNA id TU1014073
length 2718
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G891356
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42883253 ~ 42886001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTCTGGTGGTCAGCGCAGTATCGTTCTGCAACACTGAAGAATCTGGTCTTCTGTGTCAAGGTCGTCCTCAATGTTGTCTTTTCTTGTGGCGAATGCCCAGGGAAAGGCAATCCTTGAGGAATACTGTCCAGTGAAAGAGTAAATACAACGAGACGGGGCATACTCAGTCAACAAAGCTGTCCATCCCCCAACACTCGGCTCTGTGATTTGATAAATGTTCAACTAGACCCAACAAAAGCACAAGATGAACAAGCTTCACAACTGACCCCACCCGTACCAATGAGTCCATTGTCCAGTAGTTTTGGATTTCAATGGATCCAATTGTAGGCCTgtgttaaaaaaaattgtaaaaaatgttCTCCTCATTTTAGTAGTTTATTTTCTAGAACATTCAATAATTCTCGTTAGAAGTCCATTTAACATCAGGAGGCCTCCAGTCACATGGTCCAAGCATGCCAAACCCCATGAGACACGTAGCACAGCATTTTGTAAAAGGGTGGGAAAATCAGCTAGGGCAAGGACGCAAGAGGCCGGCCTGATGAACAAGTCTCTGTTGGAGGTACAAGGAGAGCGAAAGGAGTCCGATTTTTGACTCCTCTCTGCCCATCTCAggttctctccatctcactccatcCCATGGCATCTAATGATAGCCACATATTACATTATCACAGCCCCCCAAAACTAATATCCATTCCCCttgataatttttttCCATTAAAAATATAATCCAGACCGGTTAAAGCGAAGACCGTTTCAGTTTGCTGATGACGTACCGATCATTCCTCTGCCCACATCTTCAAAAACTCAATTGTCACAAGATTTAGGCAATGAGGAAAAGCAAGAGATCATTCATGAATAGTAACAACCCAGACATtcaaagataaaaaaaaaaaggagaccaatttctcttaaaaaaaaaaaaacacacgacTGCTACATTTCCCATGCTAGTTCCTCGTGTGTGTTGTATCGAGGACGACAACATGGCGGTGGACAGATGTCTTCATCTTATTAGGATGTGTTTCTCAGAGAGCAGTAAGAGAAGGCAGTGTTCAGCCGTGTCCATCTTGGTTTCATTTACAGTAGCTCATCTTCTGGGATTCTAATACTTCTTCAGCAAAACTCTACTCATTAGCTCCAAAATATTTGTTTAAAGTCTGGCTTCATCTCAATGCACTGTTGTACATTTCAGTTTTTTTGGAATACATTCATTTCCACacccagattttttttttttttttaagtaaaaataATTACCATaagaggcaaaaaaaaaaaactaaaacaacaaTATAAAAATACAATAGTGTAGCAGCTTCAAAAGTGCTCCATATCAAGTCCAAATACTTTCACTTTGTTTAAAAACTGACATTCTATTCAAAAAGCAACACAAAGACAGGACTCTAGCTATCGATACTAGGGTTAACATACGCAGTGGCAATCGTCTGCAAAACTGCCTGGAAGCAGGAAAGCAAGACCTCAACACTGACATGTCGTTAAAGGCAATAGATCCCCTTGGAAAATGCAAGGGACTTCTCTGGTCTTACCAACTCTCATAACCACAAGGAAGAGAACGATTAAACAGAACTGTATGGTTCTTTAAACGAGAGAGAGTGACTTAACTGCAGTAAAATACACCTCGGAAATCTGCCTTGAATCATAAGATCTGTTTTCACAGTTGTATCAGCGAATCAGAGCCCATGGACCGTCGTGACTCACCATGGAGAATGAGGGCAGCAATGCACCAATGACAAAACACAGACGGCCAGACGGGTAACTGGACACCAAAGCAAAAGACCTTCAATGAAGTCATTTAGGGGATGAGGAGCTGGTGAAAGATTGGTTGAAAAGAGCCCTCTCCACTCTCGCTTAGAGACTCCATGTACAAAACATACACATTCATTGGCTACCAATCACTCATACATCTGACATGGGCACACATTGCatacattcttcaaagtaaaaAAAATTCATGGAACAACGTAAAAACATGGCCTTTTTATGCATCTCTGTAAGCAATAAAAATTGTGCAGGCTTTAAGTCTACCACACAAACCCACCAGCATTCAAAGAAATGTTTTCTTCCAATACTTATCTACAACTAGTTTTGTTTATCTAAGTGCAAACCTTCAAGTTTTTTTCTTAATAAAATGCAATTTGTTATAGCTTTACATTTTATATAAaaacttaaagaaaaaaaaaagtatatacttTCCAAAAGAAGTCCTCATCACCCGACATTATTATTGGAGATGTAACCTCCAGTTCCTTACTTAGGTATGTttgcacacacacatccacatgtGTGTATTCATATTGTAGACACAATATGCACATTTTGCATCCTAAAAACAAGAAAACAAACTGGCAAAACTTCATTTCAAATATTGAAACCCTGTGATAAAGTGCATTAGTTTAGTTTAAGGTGCTTAACTGTAAGAAGTGCAGGAGGGTACTcctctgcaccccccccccccccctcccctcacacagagatgagagaaaaaaacactACTTTTCCAGGTCCTCATCTATGAGGGGGCAAAGTAGCTCAGCAGTGCACATTCGtcattgtctgtgtgggtgagtgtttgtgtcagtgtgtgttttaATCCAGGTGTAAGGCCTCAGGTGGATTCAGGTAGATGCTGTGGATCAATAATCCTCCACTGTTTCCATCTCACCCAGGTTCATCCTGTCCCCAGCACCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014060 lncRNA downstream 13865 42866799 ~ 42869388 (-) True G891343
TU1014051 lncRNA downstream 29887 42852802 ~ 42853366 (-) True G891339
TU1014050 lncRNA downstream 30695 42852078 ~ 42852558 (-) True G891338
TU1013548 lncRNA downstream 222081 42660834 ~ 42661172 (-) True G890906
TU1013547 lncRNA downstream 222752 42660302 ~ 42660501 (-) True G890905
TU1014102 lncRNA upstream 41499 42927500 ~ 42927709 (-) True G891384
TU1014105 lncRNA upstream 43938 42929939 ~ 42930205 (-) True G891387
TU1014111 lncRNA upstream 56980 42942981 ~ 42943265 (-) True G891393
TU1014143 lncRNA upstream 96631 42982632 ~ 43109649 (-) True G891424
TU1014093 lncRNA upstream 118236 43004237 ~ 43008599 (-) False G891376
XM_036934574.1 mRNA downstream 17138 42863215 ~ 42866115 (-) True LOC110533116
LOC110533115 mRNA downstream 23483 42853398 ~ 42859770 (-) True LOC110533115
XM_021618526.2 mRNA downstream 54556 42812587 ~ 42828697 (-) True LOC110533936
XM_036990358.1 mRNA downstream 175535 42650285 ~ 42707718 (-) True LOC110533935
XM_021618523.2 mRNA downstream 266706 42608587 ~ 42616547 (-) True LOC110533934
XM_036990366.1 mRNA upstream 147995 43033996 ~ 43038340 (-) True LOC110533943
XM_021618531.2 mRNA upstream 161654 43047655 ~ 43056228 (-) False LOC110533944
XM_021618532.2 mRNA upstream 161654 43047655 ~ 43056228 (-) False LOC110533944
XM_021618533.2 mRNA upstream 161654 43047655 ~ 43056228 (-) False LOC110533944
XM_021618534.2 mRNA upstream 161654 43047655 ~ 43056228 (-) True LOC110533944
TU1012992 other downstream 805306 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 893452 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 898836 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2335886 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 2989550 39854966 ~ 39893703 (-) True ksr1a
TU1014179 other upstream 173009 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 307681 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 797573 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 824484 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1313395 44199396 ~ 44209264 (-) True LOC110533117

Expression Profile