RNA id: TU1013761


Basic Information

Item Value
RNA id TU1013761
length 204
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G891093
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42926681 ~ 42926884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattttattgcatgacatattactccagtgctagcctccctacactggctacctgttaaggcaagggctgatttcaaggttttactgctaacctacaaagcattacatgggcttgctcctacctatctctctgatttggtcctgcagtacatacctacacgtacgctacggtcacaagatgcaggcctcctaattgtccctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013731 lncRNA upstream 39419 42885329 ~ 42887262 (+) False LOC110533937
TU1013730 lncRNA upstream 39523 42883854 ~ 42887158 (+) False LOC110533937
TU1013732 lncRNA upstream 39523 42885329 ~ 42887158 (+) True LOC110533937
TU1013719 lncRNA upstream 73932 42852207 ~ 42852749 (+) True G891055
TU1013631 lncRNA upstream 111535 42810871 ~ 42815146 (+) False LOC110533114
TU1013813 lncRNA downstream 66158 42993042 ~ 42993613 (+) True G891142
TU1013817 lncRNA downstream 87861 43014745 ~ 43028438 (+) True LOC110533942
TU1013835 lncRNA downstream 107113 43033997 ~ 43036826 (+) True G891157
TU1013857 lncRNA downstream 136210 43063094 ~ 43070131 (+) True G891171
TU1013894 lncRNA downstream 220054 43146938 ~ 43147169 (+) True G891207
XM_036990360.1 mRNA upstream 3206 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA upstream 3206 42887818 ~ 42923475 (+) True LOC110533939
XR_005053666.1 mRNA upstream 41031 42866768 ~ 42885650 (+) False LOC110533937
XM_036990359.1 mRNA upstream 115635 42740165 ~ 42811046 (+) False LOC110533114
XR_005053665.1 mRNA upstream 322949 42601412 ~ 42603732 (+) True LOC118966778
XR_005053667.1 mRNA downstream 24754 42951638 ~ 42956223 (+) True LOC118966779
XM_036990365.1 mRNA downstream 58828 42985712 ~ 43008622 (+) False kdm6bb
XR_005053668.1 mRNA downstream 62432 42989316 ~ 43008622 (+) False kdm6bb
XM_036990362.1 mRNA downstream 62433 42989317 ~ 43008622 (+) False kdm6bb
XM_036990363.1 mRNA downstream 62433 42989317 ~ 43008622 (+) False kdm6bb
TU1012699 other upstream 772903 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 1209389 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 1209389 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 1209389 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 4114542 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 55798 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 169836 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 607432 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 607432 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 615582 43542466 ~ 43555517 (+) True G891740

Expression Profile