RNA id: TU1014143


Basic Information

Item Value
RNA id TU1014143
length 983
lncRNA type read_through
GC content 0.46
exon number 2
gene id G891424
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42982632 ~ 43109649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtcatctaacctaacaatttcacaacaactaccttatacacacaagtgtaaaggatgaagtatatatgaatatatgaatgagtgatggtacagaacagcataggcaagatacagtagatggtatagagtacagtatatacatatgagatgagtaatgtagggtgtgtaaacatattaagtggcattgtttaaagtggctagtgatatataaaatgtattaatttttccattattaaagtggctggagttgagtcagtatgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggtccctgctttgatgcacctgtactgacctcgccttctggatgatagcggagtgaacaggcagtggctcgggtggttgttgtccttgatgatctttatggccttcctgtgacatcgggtggtgtaggtgtcctgtagggcaggtagtttgcccccgtgatgcgttgtgcagacctcaataccctctggagagccttacggttgtgggcggagcagttgccgtaccagtcggtgatacagcccaacaggatgctctcgattgtgcatctgtaaaagagtgcttttggtgacaagccaaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcgccacgctgtctgtgtgggtggaccaattcagtttgtccgtggtgtgtacgccgaggaacttaaaacttactaccctctccattacTGAGAGGGTAGGGatagggctcagaatgcacccttgtggggccccagtgttgaggatcagcggggtggagacgTTGTTGACCATTTCAATTTATCCGTGATGTGTACgacgaggaacttaaaactttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014111 lncRNA downstream 39367 42942981 ~ 42943265 (-) True G891393
TU1014105 lncRNA downstream 52427 42929939 ~ 42930205 (-) True G891387
TU1014102 lncRNA downstream 54923 42927500 ~ 42927709 (-) True G891384
TU1014073 lncRNA downstream 96631 42883253 ~ 42886001 (-) True G891356
TU1014060 lncRNA downstream 113244 42866799 ~ 42869388 (-) True G891343
TU1014210 lncRNA upstream 32189 43141838 ~ 43142068 (-) True G891488
TU1014212 lncRNA upstream 34274 43143923 ~ 43144798 (-) True G891490
TU1014213 lncRNA upstream 35633 43145282 ~ 43145833 (-) True G891491
TU1014217 lncRNA upstream 41050 43150699 ~ 43151039 (-) True G891495
TU1014221 lncRNA upstream 45069 43154718 ~ 43154922 (-) True G891499
XM_036934574.1 mRNA downstream 116517 42863215 ~ 42866115 (-) True LOC110533116
LOC110533115 mRNA downstream 122862 42853398 ~ 42859770 (-) True LOC110533115
XM_021618526.2 mRNA downstream 153935 42812587 ~ 42828697 (-) True LOC110533936
XM_036990358.1 mRNA downstream 274914 42650285 ~ 42707718 (-) True LOC110533935
XM_021618523.2 mRNA downstream 366085 42608587 ~ 42616547 (-) True LOC110533934
XM_021618546.2 mRNA upstream 8919 43118568 ~ 43140702 (-) False LOC110533951
XM_021618545.2 mRNA upstream 8919 43118568 ~ 43140704 (-) False LOC110533951
XM_021618544.2 mRNA upstream 8919 43118568 ~ 43140706 (-) False LOC110533951
XM_021618548.2 mRNA upstream 8928 43118577 ~ 43140699 (-) True LOC110533951
XM_021618550.2 mRNA upstream 60076 43169725 ~ 43174015 (-) True LOC110533953
TU1012992 other downstream 904685 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 992831 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 998215 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2435265 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 3088929 39854966 ~ 39893703 (-) True ksr1a
TU1014242 other upstream 84033 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 573925 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 600836 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1089747 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 1196570 44306219 ~ 44308933 (-) True LOC110534000

Expression Profile