RNA id: TU1013804


Basic Information

Item Value
RNA id TU1013804
length 960
RNA type TUCP
GC content 0.46
exon number 2
gene id G891133
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42982682 ~ 43109676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAAcgtctccaccccgctgatcctcaacactggggccccacaagggtgcattctgagccctatCCCTACCCTCTCAgtaatggagagggtagtaagttttaagttcctcggcgtacacaccacggacaaactgaattggtccacccacacagacagcgtggcgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaatttggcttgtcaccaaaagcactcttttacagatgcacaatcgagagcatcctgttgggctgtatcaccgactggtacggcaactgctccgcccacaaccgtaaggctctccagagggtattgaggtctgcacaacgcatcacgggggcaaactacctgccctacaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgcctgttcactccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagcagggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacatactgactcaactccagccactttaataatggaaaaattaatacattttatatatcactagccactttaaacaatgccacttaatatgtttacacaccctacattactcatctcatatgtatatactgtactctataccatctactgtatcttgcctatgctgttctgtaccatcactcattcatatattcatatatacttcatcctttacacttgtgtgtataaggtagttgttgtgaaattgttaggttagatgactcgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttcta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013761 lncRNA upstream 55798 42926681 ~ 42926884 (+) True G891093
TU1013731 lncRNA upstream 95420 42885329 ~ 42887262 (+) False LOC110533937
TU1013730 lncRNA upstream 95524 42883854 ~ 42887158 (+) False LOC110533937
TU1013732 lncRNA upstream 95524 42885329 ~ 42887158 (+) True LOC110533937
TU1013719 lncRNA upstream 129933 42852207 ~ 42852749 (+) True G891055
TU1013894 lncRNA downstream 37262 43146938 ~ 43147169 (+) True G891207
TU1013896 lncRNA downstream 38497 43148173 ~ 43150220 (+) True G891209
TU1013899 lncRNA downstream 39703 43149379 ~ 43149739 (+) True G891211
TU1013909 lncRNA downstream 53855 43163531 ~ 43163819 (+) True LOC110533952
TU1013923 lncRNA downstream 82015 43191691 ~ 43191946 (+) True G891235
XR_005053667.1 mRNA upstream 26459 42951638 ~ 42956223 (+) True LOC118966779
XM_036990360.1 mRNA upstream 59207 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA upstream 59207 42887818 ~ 42923475 (+) True LOC110533939
XR_005053666.1 mRNA upstream 97032 42866768 ~ 42885650 (+) False LOC110533937
XM_036990359.1 mRNA upstream 171636 42740165 ~ 42811046 (+) False LOC110533114
XM_021618543.2 mRNA downstream 2266 43111942 ~ 43118330 (+) False LOC110533950
XM_036990372.1 mRNA downstream 2402 43112078 ~ 43118330 (+) True LOC110533950
XR_005034481.1 mRNA downstream 3466 43113142 ~ 43113351 (+) True LOC118937086
XR_005034472.1 mRNA downstream 3895 43113571 ~ 43113650 (+) True LOC118937076
XR_005034482.1 mRNA downstream 4518 43114194 ~ 43114404 (+) True LOC118937087
TU1012699 other upstream 828904 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 1265390 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 1265390 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 1265390 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 4170543 38755509 ~ 38812139 (+) True LOC110533845
TU1014469 other downstream 424640 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 424640 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 432790 43542466 ~ 43555517 (+) True G891740
TU1014589 other downstream 602869 43712545 ~ 43713082 (+) True G891847
TU1014606 other downstream 623881 43733557 ~ 43737527 (+) False LOC110533965

Expression Profile