RNA id: TU1015827


Basic Information

Item Value
RNA id TU1015827
length 3320
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G892936
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43612372 ~ 43615811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTGATTGAATGTTTTACAATACACAAGGTTATATTTACAGCTTGGATAATATTGTTGGTGGTACACATTGGTAGAGGTGTTCCCCCTTACTCTTTTGAGCACTATATAAATCCAATGAATTATTTATTAGTTCCTGAGCTATTCACTGAGAAGACCATTTAAGGGCAGAAATCACATTTATTGTCAATACAGCACATTGCACATCCACCTAGAAAAGTGTACAAAAGTATACCATATCCCTTGTTTTTCTAATGTGTAAGGGAACACAACAATCCCTCGTTACAAAATGGGATCGATCGAAGTGATGGAGAATAGCAAACAGATACTTCCCTTAAAACAGGGGTTCCCAATGACTGTCCCGAAGTAGAGCTATGCAGGTAATCAGTAAACAGATACTTTGTTTAATGTATGTGATCGGTTATATAGAATATGTCTATATTGGGGTAGATATATGGACTGAAATTGGGCTGCCCCTTAAAAATAACCAACACTCAGAATGTAGATTGAAGTGTAATGTATAGAACAGGCATTTGATTGAGAACTGACGTTACACATACATTTCATCCGCAACCTTGATAGCAAACCACTGAATATGCCCTGTGATCAAAAGGCTCTTCAATCTGTATCACTGAAGTCAACATATGAAGCGTTTACCGCTAACTCAGGAACGatgcctttacatttcaatcacgctgtaatgCCGAACTTCCGCAATACGGATGTAATAGAGCCCTAAATCCCTATAATGAAACATCTCTGAAGGCCATCTCTACCTTTCAGATCCCCTCAACAGGCACAGGACATCGCTCCTCTCACCCTTTTGACAACTGTGCTGTATCCAaaacctacagtgcattcagaaagtatccagaccccttggatttttccacatgttacattacagccttattttaaaatggattaaataaaaaacaaatcctcagcaatctatacaaaatacaccataatgacaaagcaaaaatgtttgcacatttaaaaaaaaaaaaaaaaaaataacttatttacataagtattcagaccctttgctatgaaactctaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttggagttgTACCACCTGTGataaatccaattgattggacatgatttggaaaggcacacacttgtctatataaaaaggtcccacattaactgcatgtcagagcaaaaaccaagccgtgaggttgaaagaattgtccgtagagctcagagacaggattgtgtcgaagcacagatctggggaagggtaccaaaacattcctgcagcatttaaggtccccaagaacacagtggcctgcatcattcttaaatggaagagatttggaaccaccaagactcttcctagagctggctacccaaccaagctgagcaatcaggggagaagggccttggtcagggaggtgaccaagaacccaatggttaccctgacagagctccagagttcatctgtggagatgggagaaccatctcaGGCTTTCCACCAAATCCGGCtttcatggtagagtggcgaggtggaagccactccttagtaaaaggcacatgacagcccgcttggagtttgcaaaaagacacctaaaggacactcagaccaagagaaacaagattctctggtctgatgaaaacaagattgaactctttggcctgaatgccaagcgtcacatctggaggaaacctggcaccctccctacagtgaagcatggtggtggcagcatcatgctgtggagatgtttttcagcagtagggtctgagagactagtcaggatcaagggaaagatgaacggagctgttagactggacaacaaccttaagcacaccgccaagacaacacaggagtagcTCCGGGGcaagtctcagaatgtccttgagcggcccagccagagcacagaTATTTACCCGATCAAAcaactgcagagaagaatggggaaaaactccccaaatacgggTGTGCCTAGCTTGTGGCAATATACCCATTAaggcttgaggctgtaattgctgccaaaggtgcttcaacaaagtactgagtaaagggtttgaatgtaagggctctgaatactttcagaaggcactgtaggtatttgTTTAGTTCATAACTTTGCAAGaatttctaaaaacgtgtttttgcttggtcatcgtggggtattgtgtgtagatgtattAAATGGTTTTTTTCATCAagtctagaataaggctgtaagctaacaacatttggaaaaagtcaaggggtctgaatactttaaaaaggcactgtacatcaagaTACCTTCCTGTAATTTCCCCTCGTCCATAATGATCCAACAGGACAAACACTTGTCTGTAAAAAGGCCCCTTACTCAACTGCAGAGGTGAAAGAGAATGTAAAATCagtgatggagagatgggacAAAGATGCAGGAGCCCTCTCATTTATACCACTTGATCCAGCAAAGACGTGAGGAACAGGTTTGTCCTTATCAGCAGAGGCTGTGACCACAGATATGACAGACAAATGCGTCACAACCGTTACTCTTCTAACAAACAAAATATCACAAAGTGATGGCTTTTACAATGGATTAAACATGTCAAAGATAACGTTATCTTAAATACAAACACAAAAGGGCAACTTTACCCATACCTGGGCCAACTGTCATGGCAAGCACAAATTAAGAGTTTAAAGTGTACAGTAACAATGACAATTCAGTGATATGTGGGCTAGCCCCATTTTTCTGAACAGAACTACAAAAGGCAActttagaaataaaaaaaaaagagtaacTTTTAAAAACATGAGTAACTCAGGTTCAGGAAATCTGACCAAGACAAAATAAAAGGCTAATTTCCCCTGGCCAGCCACACACCAATTACTACCAACTCCAGTCTTCCCATCATGTGTGCATGCAAACAATGCAAGCCATCCCTAACACAAAAATAACACCTGTTTAATTTCACCCTGAAATGCCTAATTCTTTATAGTAAAAAGGTAAGTTGTACAAGATGCATTAAAAAATATGTTGATAGAAAATCCCAACGTAAGAACAGGCATTGGATTTAAAAAGGCTACGTCCGTGTGAGTCTGTTTGTCGGTCTGTTCAGTCGACCTTGCTGCGCAGTCTTGCGGTGTCCAGCAGGTACCTGCAGGTGGGGCCGGTGTGGTAAGAGAAGAGGGTCAGGGCCTTCCCATGGACCAGGGTCAGCAGGGTCTGGTGACCCGCAGCCCAAACCCGGTACCAAGGCCCATAAAATGGGTCAGACACCGCTGGACACAACATGTTATTCAGGTTGACCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015625 lncRNA downstream 259466 43330795 ~ 43352906 (-) True G892746
TU1014257 lncRNA downstream 411452 43199905 ~ 43200920 (-) True G891534
TU1014249 lncRNA downstream 429059 43183084 ~ 43183313 (-) True G891526
TU1014245 lncRNA downstream 433468 43178681 ~ 43178904 (-) True G891522
TU1014244 lncRNA downstream 434192 43177949 ~ 43178180 (-) True G891521
TU1015847 lncRNA upstream 79253 43695064 ~ 43695404 (-) True G892955
TU1015848 lncRNA upstream 80008 43695819 ~ 43696019 (-) True G892956
TU1015850 lncRNA upstream 80305 43696116 ~ 43698631 (-) True G892957
TU1015853 lncRNA upstream 86054 43701865 ~ 43702205 (-) True G892960
TU1015854 lncRNA upstream 86564 43702375 ~ 43702719 (-) True G892961
XM_021618554.2 mRNA downstream 56771 43543161 ~ 43555601 (-) True LOC110533957
XM_021618553.2 mRNA downstream 70091 43534280 ~ 43542281 (-) True LOC110533956
XM_021618551.2 mRNA downstream 364366 43183815 ~ 43248006 (-) False LOC110533954
XM_036990374.1 mRNA downstream 366710 43183815 ~ 43245662 (-) False LOC110533954
XM_021618550.2 mRNA downstream 438357 43169725 ~ 43174015 (-) True LOC110533953
XM_021618556.2 mRNA upstream 62 43615873 ~ 43653352 (-) True LOC110533959
XM_036990378.1 mRNA upstream 43616 43659427 ~ 43675574 (-) False LOC110533960
XM_021618558.2 mRNA upstream 43616 43659427 ~ 43676272 (-) False LOC110533960
XM_021618557.2 mRNA upstream 43616 43659427 ~ 43676273 (-) True LOC110533960
XM_021618559.2 mRNA upstream 60790 43676601 ~ 43678032 (-) True LOC110533961
TU1014242 other downstream 364737 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 542214 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1534425 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1622571 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1627955 41982701 ~ 41984417 (-) True G890360
TU1015844 other upstream 67763 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 94674 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 583585 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 690408 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 1152639 44768450 ~ 44769072 (-) True G893541

Expression Profile