RNA id: TU1015807


Basic Information

Item Value
RNA id TU1015807
length 1920
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G892917
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43714181 ~ 43722407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACTTGCTCTCATAGGCTTCTTCCAACTTGAGCCACCCACACTACGACATACCCCTGACTCCAATTGATCCCTGTTCAAGCTGTTCTGAGATTATCATGAAAAAAGGAATGCATTTTTGTTTGTACACAGCACATTTACTGTTTGCTCAAAGGTTTTGGAAATAACTTAATAGAATAAGGTCACATTTTGGAATTTTAATTTTACTGGAAGCATGCTGGAAAATAAAACTAGATTTAGCTAGACATGCTAAAGCATAACTAATTTGGCAATACAGGAATTGCCATCAGATGCATGTGAACAAAGTGCATAAATTAACCCAGTGGGTTGGTCATAGGCTTGCTCATCAGTTTCTTTCATCTGCCTGATCCAGACACCCCTCCATTAAACAAGAGACATAACCAGTACtcatctgtttaaaaaaaaagtctCTGTAAAACCCATTTTGTTCATTAGTTGGAAAATGCAAGGGCAAATTTTCTTCCATTAGATATCATTCTTCATGAGTTTGGAAGTTGCAAGGCCAATCTCAGAAATGGTGACAAATCTTCATCTATTTTTTCATAATCCTTCATCACAAATTGCCATTTAAGACATGTCTGTGTTCTTCATTGTGACAAGTGGAATGATAACCACAATTTTAAACCATGAAACAGCATGCTTGATTTTTCTCCACACAACAAAATACCCCATCCCAACACCCTCAAATTTGTACTCTAAACCCCCCTCACCTAATTCCTTATCATTCTGGAATGAACAGCCATACCCACGGGATTTaaaattctgttttttttttctttccctGTAGGCCTCAGATCATACCCGAGACGGGATTTATACAGGCCCACCTTCAAGGGTGACCACTGACGAGCCTCCAAGCTTCTCTGCTAAGGTTCGCCGATCTTTGATGTCTTCCAAACCGTTAACTTGCCATTCATGCTTGATACCTGTGAATTTCTTTTTAATGGCATCCTTTGAGCTGGCGTAGATCATTTTGCTCTTCAGTGGAGCACCATCTGGGGCCCAGAAGATGAAGACCAGGTCCTCTTTCTTGGTCTCCTTGGTCTCGTAGGTGGCGTCATAGAGGGCGTAGCGACAGTCATCTGCGGGCAGCATCTTGACAAAGTGCAGGTAGGGGTCTGCAATGGTAGTACCCACATCGCCAGTCAGGATCTCTTTACCCGATTCAAGGACGATGTGTTTCTTGTCCTCGCTCAGGCAGAACAGCACCGCCTTCTTCCGCTTCTTCTTCTCGTCCTCGTTCGCCTGGGCCTTACGCACCTTCATCTCGTTGAAGACTGTAATAACTTCATCGGTCACTGTCACCCCAGAGGCCATGGTTGAGTCTTTTGTCTATCCGCGTCTGAAAAGTCGTTCCTCTTGAGCTCGCAGCCTCGCACAGCACCAAAGAGGCAGACCGTGACTGACAGGCACAGTTTTCACGGAAATACGTTTTTACCGTGGCCACGCCCCCACTACGGTGGTACGGATGTGAAAACAAATCCTCAGAATCTGCTATTGGCGCGGGAGAGGGAATATTACTTTAGTGGTGATGGGGAAACTCAATTGAAATCATTTTATAGCTGCGGTGTATAcctttttgggcgacccgaccaaatgTACATAGAgttgtgagttatagatctgtcattctcactgAACGCAAGTCTAAGAAGGTTTTTgggcactatttctatgcttccctttCTTAAGGTGCATTTTTTGCATCTTTtattttcagttttgtacaccagcttcaaacagctgaaatatTTGTGGTTTTCGATTGATTCTCTGGACTTTacgtgcttgttttgtcacatcagctgaaattaggcaaactattcgatttttagcaaccaggaacTGGCGGAacgatttatctctctctctatatatatacattacacacagtgaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015855 lncRNA downstream 10905 43702922 ~ 43703276 (-) True G892962
TU1015854 lncRNA downstream 11462 43702375 ~ 43702719 (-) True G892961
TU1015853 lncRNA downstream 11976 43701865 ~ 43702205 (-) True G892960
TU1015850 lncRNA downstream 15550 43696116 ~ 43698631 (-) True G892957
TU1015848 lncRNA downstream 18162 43695819 ~ 43696019 (-) True G892956
TU1015867 lncRNA upstream 9970 43732377 ~ 43732665 (-) True G892974
TU1015875 lncRNA upstream 31906 43754313 ~ 43754550 (-) True G892982
TU1015810 lncRNA upstream 50429 43772836 ~ 43779774 (-) True G892919
TU1015886 lncRNA upstream 59287 43781694 ~ 43782083 (-) True G892991
TU1015916 lncRNA upstream 120855 43843262 ~ 43845696 (-) True LOC110533972
XR_002475067.2 mRNA downstream 20097 43691234 ~ 43694084 (-) True LOC110533963
XM_021618560.2 mRNA downstream 27577 43681449 ~ 43686604 (-) False LOC110533962
XM_021618559.2 mRNA downstream 36149 43676601 ~ 43678032 (-) True LOC110533961
XM_021618557.2 mRNA downstream 37908 43659427 ~ 43676273 (-) True LOC110533960
XM_021618558.2 mRNA downstream 37909 43659427 ~ 43676272 (-) False LOC110533960
XM_021618563.2 mRNA upstream 21391 43743798 ~ 43750767 (-) True tmem179bb
XM_021618568.2 mRNA upstream 115967 43838374 ~ 43846088 (-) False LOC110533972
XM_021618569.2 mRNA upstream 171678 43894085 ~ 43898188 (-) True LOC110533973
XM_036990387.1 mRNA upstream 187495 43909902 ~ 43940813 (-) False LOC110533974
XM_036990384.1 mRNA upstream 187495 43909902 ~ 43966849 (-) False LOC110533974
TU1015858 other downstream 3212 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 30261 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 466546 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 644023 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1636234 42076741 ~ 42077947 (-) True G890403
TU1016035 other upstream 476989 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 583812 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 1046043 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 1288922 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 2024908 45747315 ~ 45750331 (-) False LOC110534046

Expression Profile