RNA id: TU1014634


Basic Information

Item Value
RNA id TU1014634
length 208
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G891884
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43781958 ~ 43782165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCACACAGTAAATTCCAAACATTAACCAGAAGCATATACTACAAAGCAGAATCAataagttagccagctaacttaataTATTGTGCAAAAACGTTTTATTTTTTTAGAAAGATGAGTTGAATGGGCATGGTCTAATTGACTCAACAACCAGAAACAAAGTTTAGGCAAAGacagtcagtggtggaaaaagtatcacattttcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014615 lncRNA upstream 25418 43754897 ~ 43756540 (+) True G891866
TU1014596 lncRNA upstream 39472 43741930 ~ 43742486 (+) True G891854
TU1014595 lncRNA upstream 49927 43731639 ~ 43732031 (+) True G891853
TU1014567 lncRNA upstream 58143 43722852 ~ 43723815 (+) True G891825
TU1014587 lncRNA upstream 70721 43710957 ~ 43711237 (+) True G891845
TU1014763 lncRNA downstream 224656 44006821 ~ 44007729 (+) True G891988
TU1014812 lncRNA downstream 303528 44085693 ~ 44086002 (+) True G892033
TU1014813 lncRNA downstream 303920 44086085 ~ 44086339 (+) True G892034
TU1014837 lncRNA downstream 355434 44137599 ~ 44137831 (+) True G892054
TU1014830 lncRNA downstream 368600 44150765 ~ 44155040 (+) True G892048
XM_021618566.2 mRNA upstream 2175 43772881 ~ 43779783 (+) False LOC110533970
XM_036990380.1 mRNA upstream 2175 43772882 ~ 43779783 (+) True LOC110533970
XM_021618564.2 mRNA upstream 12013 43765085 ~ 43769945 (+) False LOC110533969
XM_021618565.2 mRNA upstream 12013 43765085 ~ 43769945 (+) True LOC110533969
XM_021618562.2 mRNA upstream 42099 43732222 ~ 43739859 (+) False LOC110533965
XM_036990382.1 mRNA downstream 1654 43783819 ~ 43879779 (+) False LOC110533971
XM_036990383.1 mRNA downstream 1654 43783819 ~ 43879779 (+) False LOC110533971
XM_036990381.1 mRNA downstream 1655 43783820 ~ 43879779 (+) True LOC110533971
NM_001165227.1 mRNA downstream 107183 43889348 ~ 43893837 (+) True fkbp2
XM_021618571.2 mRNA downstream 180915 43963080 ~ 43979112 (+) False LOC110533975
TU1014602 other upstream 38468 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 40928 43738585 ~ 43741030 (+) True LOC110533965
TU1014606 other upstream 44431 43733557 ~ 43737527 (+) False LOC110533965
TU1014589 other upstream 68876 43712545 ~ 43713082 (+) True G891847
TU1014468 other upstream 226441 43542466 ~ 43555517 (+) True G891740
TU1014709 other downstream 156247 43938412 ~ 43940557 (+) True G891951
TU1014802 other downstream 295552 44077717 ~ 44080196 (+) False LOC110533983
TU1014803 other downstream 295552 44077717 ~ 44081410 (+) True LOC110533983
TU1014996 other downstream 873393 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 1226669 45008834 ~ 45010849 (+) True G892499

Expression Profile