RNA id: TU1014709


Basic Information

Item Value
RNA id TU1014709
length 1674
RNA type TUCP
GC content 0.60
exon number 2
gene id G891951
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43938412 ~ 43940557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCGTCGTTCTGGAACTCCAGTTTCCCAGCCACCTCCTCGTAGTCCTCCCCAGCCTTGGCGGTGCCCTCCAGGGTGTGGTAGGGGATGGCCACTTTACCCCTGGCCCCGGACATCCGGTGCACCTTTACCTGCATGGTGCCCACGCTCTCGCTCACCCTCATTGACTCTACTTCAAACGTGAAGATGCCTGCGTGGTCGTCGTCATAGATGGTTACCGTGGCAGTGTGGGCGTTGCCCAGGGCGGCCTTGGGGGATACGTGGGGGGAGAGGTTCCTCAtactgctggtggtggtgatggtgctgGGCTCCAGGATGGCCACCTCGGCACGGTGGACAATGCGAGGGTTGCTGAGGTGCACGTAGATGGTGTGGGGGTCCTCCTCCTGTCCGCTGGCCTCATGGCAGCTCACCACCTTCCTGGCCTGGTCGGCAGCATGCTTCTTCAGGATGTTCCCAGCACCGATCATCATGCGTGTGGCCTGGATGCGGTAGAAGGCCCTGCTCTTCTGCTGCTGGACCAGAACCTGGTAGTTGGCCATCTCAATCAGCtgctctgtgtctttctctgggTGCCTCTGTTTCAGCTCCTTCAGGGTGCGGGCCATGTCCCTCCGAGCCTCATCCTCTTCTGAGTTCagccctccaccctcctccaccccctccagcatGTGGTCCAGCACATCCTTGGGGTGGGGGTGGGAGTTGCCCCCCTGGCCGTCCATCTCCACATCCATCTTGGTGAACATGCTGTCCCCCTCTGTCTCGATGATGATGCCGCGGGCCTTGTCGACACGGTAACGCTTGTGGATGTACTTGTAGAAGAGCAGGCGTCGGTCCGCGACCCAGGCCTGCACCACACAGATGGGGAAGAACATGAAGGTAAGTACGGCCTCCCACACCTCCACCTCCCCCGGGGAGATGACAGCCAGGATCAGGTAGAGCCAGATGTAGGCGAAGATGCTCCAGGTTGCCGTGACGAAGAACACCCTCAGGTGCTTGATCCTGCGTGTCTCGTTCTCTGGCACCACGTGCACACAGAGGGCAATGATGACAAACATGTTGAATGCTGCGCTGCCCACGATGGTGCTGGGGCCCAGGGAGCCTGCCTCAAACGAGTGGCCACACACCTCGATGACAGACAGCAGGATCTCTGGGGCAGACGAGCCTAGGGCCATCAAGGTCAGGTTGGATACGGTCTCATTCCAGATGCGTACAGTGGCTGTGGTGGTCTCTCCGTTGGGCTTCTTGATGGTGATCTCTTTCTCCTGAGAGGTGATGACCTCAATAGAAGACATGAAGCGGTCAGCAATGATGGACATGCCCAGGAACATGTAGATGAGGGCCACGAAGTAGACGATGGCCCGTGCCACCTTGTCGCCCACTGACGGGTTCTGAGGGTTCCACATGGGCAGGACCACGCCCTCAGAGCAGGGATCTCCATCAGAGCAGTTGCTGGGCGGGCTGCTGAGTGCTGCATGGTCTGAGCCAGCCTGGGAGAGGTGGGTAAGccccaggaggaagaggaggaagagggaggtggagaggctggaggaggtagaggagagttgGGCAAGGCTCAGAATGTGGGTGTGTAACATGCCGGCGTCTGGACATTCGAGTCAGCTGGCTCCAGAGATCAATCCACTTCACGTCTAACGTCTCAACAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014634 lncRNA upstream 156247 43781958 ~ 43782165 (+) True G891884
TU1014615 lncRNA upstream 181872 43754897 ~ 43756540 (+) True G891866
TU1014596 lncRNA upstream 195926 43741930 ~ 43742486 (+) True G891854
TU1014595 lncRNA upstream 206381 43731639 ~ 43732031 (+) True G891853
TU1014567 lncRNA upstream 214597 43722852 ~ 43723815 (+) True G891825
TU1014763 lncRNA downstream 66264 44006821 ~ 44007729 (+) True G891988
TU1014812 lncRNA downstream 145136 44085693 ~ 44086002 (+) True G892033
TU1014813 lncRNA downstream 145528 44086085 ~ 44086339 (+) True G892034
TU1014837 lncRNA downstream 197042 44137599 ~ 44137831 (+) True G892054
TU1014830 lncRNA downstream 210208 44150765 ~ 44155040 (+) True G892048
NM_001165227.1 mRNA upstream 44575 43889348 ~ 43893837 (+) True fkbp2
XM_036990382.1 mRNA upstream 58633 43783819 ~ 43879779 (+) False LOC110533971
XM_036990383.1 mRNA upstream 58633 43783819 ~ 43879779 (+) False LOC110533971
XM_036990381.1 mRNA upstream 58633 43783820 ~ 43879779 (+) True LOC110533971
XM_021618566.2 mRNA upstream 158629 43772881 ~ 43779783 (+) False LOC110533970
XM_021618571.2 mRNA downstream 22523 43963080 ~ 43979112 (+) False LOC110533975
XM_021618574.2 mRNA downstream 31739 43972296 ~ 43979112 (+) False LOC110533975
XM_021618572.2 mRNA downstream 31740 43972297 ~ 43979112 (+) False LOC110533975
XM_021618573.2 mRNA downstream 31740 43972297 ~ 43979112 (+) True LOC110533975
XR_002475071.2 mRNA downstream 96018 44036575 ~ 44052995 (+) False LOC110533981
TU1014602 other upstream 194922 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 197382 43738585 ~ 43741030 (+) True LOC110533965
TU1014606 other upstream 200885 43733557 ~ 43737527 (+) False LOC110533965
TU1014589 other upstream 225330 43712545 ~ 43713082 (+) True G891847
TU1014470 other upstream 338182 43534316 ~ 43600230 (+) True G891741
TU1014802 other downstream 137160 44077717 ~ 44080196 (+) False LOC110533983
TU1014803 other downstream 137160 44077717 ~ 44081410 (+) True LOC110533983
TU1014996 other downstream 715001 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 1068277 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 1613680 45554237 ~ 45568592 (+) False LOC110534033

Expression Profile