RNA id: TU1014957


Basic Information

Item Value
RNA id TU1014957
length 2652
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G892157
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44301794 ~ 44304579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgaataaaaaaaCGTATTGTGGGTTTAACTAAACCTAATCAGTCACTGGTTAAGTTTGGTAGTGCACATTATATAAATTACAAAGGAAAGAAAACAGTGAAGTTACAGGGTTCGATATATTTTAGTCTCTacggctgcgtttacacagGTAAAGTAAATGTATAGCAAACAGAGCAGATCATGTTTGACAAACAGGCCTACACGTTTACCAGGTCAGTCTCTCAATGGCCAAATTAATACTGAAAGAAAAAAAGGCACTTGGTCTTTTTATCCAGACTATTGCTTCATTTGAGTGtgagaaagacagaaacagagagacagtgtaagAGAGTCCAAAAATATTAGTCCAAGTTATTACTCCAATAATAATACTAAGAATACAAATCATGACCAAAGGTAAACACTTGACAGTATTTCTGATGTATCAATAGTGCATGTTTAAGATATTGAATGTTGTGCATGTACAGCAAGTGAGTACACCACCATCTTTTTAAAAAGGAATACCACATCCATAGATCGCGTGCCTTAGGAATTATGAATCGGAACATTTTGTTGTCTTTGCATAATTGACCATATCAGTTATAACATAGTGGAAACCACATTCTTCAGTTTATGAACACTTAATTGCATCAGAGATATACAGTAGAATCGCTCCTCTCATACTGAAGAGAGGTCAGCAGAAGAACTGTCATCAGGAAACACATCCTCTTGCTGAATGGTCAGCTAAGTGGGTGAGACTAAATGTGCTTTTCTGACGTGCAAACCGACTAGCCAAATATAAAACcgacccttaccttaacccttaacccagaCCCTAACCCACATTTAAACAATTCAAAAAGTAAATATTGGTTTACACATCAGAAAATTCTCTTTAGTCTCTCCCCTCCCAAGTCAAGCTGCCCTTGCATGGTGTACAATATAAACAATAACAGTGCTAGAATGCTAGGCCTTGTCATTTCTGGGAGGGAGATACAGATAAAGTCCATGATAACCATGAGACTCTGAATCTGAGTGTTTAGCACAGAGAGGCATAGACTACCACAAGATATACGTTTGTTTTGGTACAAAGACTGAGGTTTGAACAAGATAGTTGCAGAGCCTCCAATATCGCCCTCCTTTCAAATAATACAATCTgcatgacagatttgtaccttgtcagctcggggttacCAGctcagcaaccttccggttactggcccaacgctctaaccactatgccacccccccaattcatcccaaaggtgttcgatggagttgaggtcagggctctgttcaggcctgtcaagttcttccacactgatctcgacaaaccatttctgtatggacctcactttgtgcactggggcattgtcatgctttaacaggaaagggccttccccaaactgttgccacaagttggaagcacagaatcgtctagaatgtaattgtatgctatagcgtaaatacttcccttcactggaactaaggggcctagcccgaaccatgaaaaacagccccagaccattattcctcctccatcaaacttgacagttggcattatgcatttgggaaggtagagttctcctggcatcctccaaactgagaatcgtctgtcggactgcaagatagtgaagcgtgattcaccactccagagaacacatttccaccgagtccaatggtggcaagcttcacaccactccagccgaccctTAAcactgcgcatggtgatcttaggctccgcggccacggaaacccatttaacGAAGGTCcaaacagttcttgtgcggatgttgcttccagaggcagtttggaacttggtattGAGTGGTGCAACGGGTGACaggttatttttttttacacgctACATGCttcagtggtcccgttctgtgagcttgtgtggcttaccacttcacggctgagttGTTGTTGCTCTTaggcgtttccacttcacaataacagcacttacagttgaccagggcagaaatttgacaaactgacttgttggaaaggtggcatcctatgacagtgccaggTTGGAAGTCACAGAGCTCTCCAGTAAGGCCATTCGACTGCCAATGTTTttctatggagatttcatggctgtgtgcttgattttatacacctgtcagcaacgggtgtggttgaaatagccaaatccactcatttgaaggggtgtccacatacttttgtatatatagtgtacatagtCATTGCACAAACTCCATCTGAAGGAGAACTGTAATAAAGGTCCCCTATCACAAGGGTAAAAGCTCAAAGGTGGCACTACTGTCAATGTTACCACTACTCATCAACAGTTTCATATTCAACTCCAACTGGTTCAACTTGACCAGTGAAGCAATGCCACTCAACGTCACTTTCCAGCACCTAAAGAACGTAAATTCATATACACAACATTTAACCATAAATATTTATTCACACTTAAATCCTACTCTTGGTCCATAGTATTTTTGCGATCAAGAAGATAAACCTCACCAACTCCCTACATATCTTTTAGCCTTAATCTCAACTTGCATGTTCAGTTTTGGTCTCCGGGTAGTATAGAGCAGTGCCTAGATCAGAGATGGAGGCTCAACCTTGCTCCACCTGTACTGATGAGTATGTAGGTGGCTGTGCCTGCCTGGTGAAAAAGGAAGCAGCTCTCTTCGGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014925 lncRNA upstream 31164 44270427 ~ 44270630 (+) True G892132
TU1014860 lncRNA upstream 47810 44253483 ~ 44253984 (+) True G892073
TU1014921 lncRNA upstream 54653 44246595 ~ 44247141 (+) True G892128
TU1014918 lncRNA upstream 60207 44240697 ~ 44241587 (+) True G892125
TU1014906 lncRNA upstream 61126 44228825 ~ 44240668 (+) True G892114
TU1014989 lncRNA downstream 93287 44397866 ~ 44398095 (+) True G892185
TU1015013 lncRNA downstream 182502 44487081 ~ 44487857 (+) True G892208
TU1015050 lncRNA downstream 185071 44489650 ~ 44489949 (+) True G892245
TU1014992 lncRNA downstream 297932 44602511 ~ 44603878 (+) False G892187
TU1014991 lncRNA downstream 298790 44603369 ~ 44603878 (+) True G892187
LOC110533999 mRNA upstream 13493 44287536 ~ 44288301 (+) True LOC110533999
XM_036990393.1 mRNA upstream 16254 44283818 ~ 44285540 (+) True mrpl49
XM_021618611.2 mRNA upstream 32817 44259513 ~ 44268977 (+) False LOC110533994
XM_021618612.2 mRNA upstream 32817 44259513 ~ 44268977 (+) True LOC110533994
XM_021618599.2 mRNA upstream 178024 44108333 ~ 44123770 (+) True LOC110533985
XM_021618619.2 mRNA downstream 15660 44320239 ~ 44325686 (+) True LOC110534002
XM_036989352.1 mRNA downstream 25605 44330184 ~ 44340628 (+) True LOC118966633
XM_021618620.2 mRNA downstream 41535 44346114 ~ 44349641 (+) True LOC110534003
XM_021618621.2 mRNA downstream 46073 44350652 ~ 44377640 (+) False LOC110534004
XM_021618623.2 mRNA downstream 47450 44352029 ~ 44377640 (+) False LOC110534004
TU1014803 other upstream 220384 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 221598 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 361237 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 558304 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 560764 43738585 ~ 43741030 (+) True LOC110533965
TU1014996 other downstream 350979 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 704255 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 1249658 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 1264873 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 1285780 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile