RNA id: TU1016174


Basic Information

Item Value
RNA id TU1016174
length 1473
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G893253
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44347790 ~ 44349638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCAACTTTAATAGATTCCCTGTCATAATAGTTCTGTAGTACAGTGCTGTGTATGTCATTTTGCTAAGTGTTAAGTAGCAGAACATTGAGCAGTGTATCGTTCTACAGTCAGCTTTACATTGCAAGTATTCCTCAaaattctatttttttatttgtgtcTTTATCAATTTGACATAGCTCTATCCTTCAGTAATTGGAAATATCTTTACATTGTAAGTGTCAACCATGATATTATTGTGGTATTGACTATTGAACACTGACATTGTGAAGTAATTGAACATATCCAACTAATTCATGTCATGACCATGTTACAGCTGGTTTTGTAGCTTTCTCAATTTAATTATATTTTAATGAACCACAACCAAATTTTCCTTCAAGGTGGATTGTGGACCGGTAGAAATAATAGTACATGTCAATCCCCGGTTCTAAAAAAAACAATTGTGTTCTTTATTTCTCCTTTGGGGAGTACATGGAATTGACTGAACATCAAATAGCTTCATTAATCATGAAAGGATTATGGAGGGCTTGGGGTGAcgttaatgtgtttaatgtgtgtgtgtgtgtgtgtgtggccatggGTACCTAAAGCTCAGACTGGGACAACTGATACAAAAATATATTTGCCCTCAAGTGACTGAAATAGATTACAACATTCAAATCACTCATTTGGGGTAAAACATATCAGCATTGGAATGGATTGTGATATCAAAGAAATACCAAATGAATTGATCAGTGTCTAGTTAGATTATTTATCACCCAATAAAGTGCCATGTTTGCCCTGAACACCACCCGGTTTGAAACATTTAGATTTCTCCTCATTATTTGGCGGGGGTCTCCCCAGCTTCAGCGTCCTCACTTCCCACCTGGTTCAGCTGAAGGAAAACCAGCACAGGAGTCACGTACTCCATGATCGTCTCCTTCACCCCTTTTTCCAGCAGGTAGCCCTCGGTCTCAATCTCAGTGTTCTCCTGCCCTGCCACCGCCTCCATGGCTGTCTGCAGGTACCGCAGACTTACCAACACTGATGACTGGACCAGGAAGATGGACAGCACCGCAGCACCAATAGTGTTCATCAGGCCCATGTAGTAATTGACCAGAGCCTCCCTGCAGCCGCGGATGTAGATGTTGAGCTCCTCGGTCTGGTGCTCGTAGTTGTAGTGGGCTGAGTTGTTGGTGAGGCGGTCCTGGATGCAGGGTCTTGGGGAACTGGGGTTGCAGCAGCTGAAAGGGACCCCATCAAACAGGTAACGCCCGTCCACGTTGCTCTTAACACGGTCCTTCACTTCCTTAGAGCTAAAGTCTAGGTAGCGGTTGCTGATCCACTGGACCTCGAACCAGTCCTTGAAGTCGGTGTTTCCACAGCACTGGAACTCCATCTGCAGGCGGTCAATGGTCTGCTTCTGGAAGCAGCGGCCGGGTGTGTCTGTGTCCTTGTAGAAGCGGATGCCGTTCTTCAGGCCGATCTTCAGGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016209 lncRNA downstream 23820 44320270 ~ 44323970 (-) True G893287
TU1016202 lncRNA downstream 61831 44285108 ~ 44285959 (-) True G893280
TU1016196 lncRNA downstream 77343 44270231 ~ 44270447 (-) True G893275
TU1016178 lncRNA downstream 88897 44256789 ~ 44258893 (-) True LOC110533992
TU1016190 lncRNA downstream 105246 44242268 ~ 44242544 (-) True G893269
TU1016251 lncRNA upstream 42437 44392075 ~ 44392427 (-) True G893325
TU1016319 lncRNA upstream 133636 44483274 ~ 44483554 (-) True G893391
TU1016322 lncRNA upstream 137382 44487020 ~ 44487986 (-) True G893394
TU1016323 lncRNA upstream 138748 44488386 ~ 44488850 (-) True G893395
TU1016324 lncRNA upstream 142181 44491819 ~ 44492076 (-) True G893396
XM_021618618.2 mRNA downstream 28231 44312153 ~ 44319559 (-) True LOC110534001
XM_021618617.2 mRNA downstream 38812 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 46134 44294538 ~ 44301656 (-) False LOC110533996
XM_036990394.1 mRNA downstream 46134 44295160 ~ 44301656 (-) True LOC110533996
XM_021618616.2 mRNA downstream 53545 44288348 ~ 44294245 (-) True tm7sf2
XM_036990398.1 mRNA upstream 161851 44511489 ~ 44513298 (-) True LOC110534010
XM_036990408.1 mRNA upstream 276284 44625922 ~ 44634804 (-) False LOC110534015
XM_036990407.1 mRNA upstream 276284 44625922 ~ 44634807 (-) False LOC110534015
XM_021618636.2 mRNA upstream 276284 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA upstream 276284 44625922 ~ 44636337 (-) False LOC110534015
TU1016171 other downstream 38857 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 138526 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 636821 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 663870 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1100155 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 418812 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 661691 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1397677 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1397677 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1567641 45917279 ~ 45918339 (-) True G894917

Expression Profile