RNA id: TU1016323



Basic Information


Item Value
RNA id TU1016323
length 465
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G893395
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44488386 ~ 44488850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAAAGCATTTATTTTGTAGAACATACACCTTTCTTATAATATTCATAGATGACTCATAATTCATATATTTTACTCAAATAGGTCATACCATATCTATGTTGTAAATTCACCACAATCATGTATTCAATTGTGTATGTCATATAAGGCATATAACACATATACAAGTACATCACTGACATATAAGGGAAAACATACAAAATCTTACCAGATCCTTATTTGATAACTTATTAGATATTGGTACAAATACTCTTCTTCTGCCATACAAGATTCTTATTTGATTCTTTTCCATATGGGTAATCCGCTAGACCATGCTGGTAAACCAGGATAGCaagctagaccatgctggtcaaaccagctagaccatgctggaCAACAAGCataaccagctagaccatgctggtcaaaccagctagaccatgctggaCAACAAGCataaccagctagaccatgctggtcagaccagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1016322 lncRNA downstream 400 44487020 ~ 44487986 (-) True G893394
TU1016319 lncRNA downstream 4832 44483274 ~ 44483554 (-) True G893391
TU1016251 lncRNA downstream 95959 44392075 ~ 44392427 (-) True G893325
TU1016174 lncRNA downstream 138748 44347790 ~ 44349638 (-) True G893253
TU1016209 lncRNA downstream 164416 44320270 ~ 44323970 (-) True G893287
TU1016324 lncRNA upstream 2969 44491819 ~ 44492076 (-) True G893396
TU1016362 lncRNA upstream 42756 44531606 ~ 44533430 (-) True G893421
TU1016381 lncRNA upstream 85240 44574090 ~ 44574393 (-) True G893436
TU1016382 lncRNA upstream 85841 44574691 ~ 44574897 (-) True G893437
TU1016403 lncRNA upstream 107743 44596593 ~ 44597291 (-) True G893457
XM_021618618.2 mRNA downstream 168827 44312153 ~ 44319559 (-) True LOC110534001
XM_021618617.2 mRNA downstream 179408 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 186730 44294538 ~ 44301656 (-) False LOC110533996
XM_036990394.1 mRNA downstream 186730 44295160 ~ 44301656 (-) True LOC110533996
XM_021618616.2 mRNA downstream 194141 44288348 ~ 44294245 (-) True tm7sf2
XM_036990398.1 mRNA upstream 22639 44511489 ~ 44513298 (-) True LOC110534010
XM_036990408.1 mRNA upstream 137072 44625922 ~ 44634804 (-) False LOC110534015
XM_036990407.1 mRNA upstream 137072 44625922 ~ 44634807 (-) False LOC110534015
XM_021618636.2 mRNA upstream 137072 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA upstream 137072 44625922 ~ 44636337 (-) False LOC110534015
TU1016171 other downstream 179453 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 279122 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 777417 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 804466 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1240751 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 279600 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 522479 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1258465 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1258465 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1428429 45917279 ~ 45918339 (-) True G894917

Expression Profile