RNA id: TU1016362


Basic Information

Item Value
RNA id TU1016362
length 1666
lncRNA type intronic
GC content 0.36
exon number 2
gene id G893421
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44531606 ~ 44533430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGACAAGTCATAATAATGACTAAAGGATAGGATCAGTGTAGTAACTAAGTGATGACAAGTCATGATAATGACAAACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAAAGGAGAGTATCGGAGCTTGCTAGTACACTATGCTCAGTGTTTCTGACCTAGCTATGAGGCCCCCCACCTCAGTCTGTGAGGTCACATCCCGTCTGTGTGTTTCCTGTGTGGTGGCTGTCTGAGCCGAGGATCAGTGTAGTAACTAGGTGATGACAAGTCATAATAATGACTAAAGATGAGTGTCAGTGTAGTAACTAAGTGATTAGAAGTAACGTTAATGACTAACTAAAGATGAGTATCAGTGTAGTAACTAAGTGATGATAAGTAATGATAATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAACTAAAGGAGAGGATCAGTGTTGTAACTAAGTGATGATAAGTCATGATAATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAACTAAAGGAGAGGATTAGTGTAGTAACTAAGTGATGATAAGTCACTATAATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATAATAATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAAAGACTAAAGGAGGGGATCAGTGTAGTAACTAAGTGATGATAGGTCATGATAATGACTACCCAAAGGAGAGAATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACGAAAGGAGGGGATCAGTGTAGTAACTAAGTGATGATAAGTCATTATCATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAATTCATGATAATGACAAAAGGAGAGGATTAGTGCAGTAACTAAGTTATGATAAGTCATGATAATGACGAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATAATAATGACGAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCACTATAATGACTAAAGGAGAGGATCGGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAAAGGAGGGGATCAGTGTAGTAAATAAGTGTTGATAAGTAATGATAATGTCTAAAGGAGAGGATCAGTATAGTAACTAAGTGATGATAAGTCATAATAATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCACTATAATGACTAAAGGAGAGGATCGGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAAAGGAGGGGATCAGTGTAGTAACTAAGTGTTGATAAGTAATGATAATGTCTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATAATAATAACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATAATAATGACTAAAGGAGAGGATCAGTGTAGTAACTAAGTGATGATAAGTCATGATAATGACTAAAGGATAGTATCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016324 lncRNA downstream 39530 44491819 ~ 44492076 (-) True G893396
TU1016323 lncRNA downstream 42756 44488386 ~ 44488850 (-) True G893395
TU1016322 lncRNA downstream 43620 44487020 ~ 44487986 (-) True G893394
TU1016319 lncRNA downstream 48052 44483274 ~ 44483554 (-) True G893391
TU1016251 lncRNA downstream 139179 44392075 ~ 44392427 (-) True G893325
TU1016381 lncRNA upstream 40660 44574090 ~ 44574393 (-) True G893436
TU1016382 lncRNA upstream 41261 44574691 ~ 44574897 (-) True G893437
TU1016403 lncRNA upstream 63163 44596593 ~ 44597291 (-) True G893457
TU1016286 lncRNA upstream 69095 44602525 ~ 44603869 (-) True G893358
TU1016411 lncRNA upstream 74965 44608395 ~ 44608606 (-) True G893462
XM_036990398.1 mRNA downstream 18308 44511489 ~ 44513298 (-) True LOC110534010
XM_021618618.2 mRNA downstream 212047 44312153 ~ 44319559 (-) True LOC110534001
XM_021618617.2 mRNA downstream 222628 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 229950 44294538 ~ 44301656 (-) False LOC110533996
XM_036990394.1 mRNA downstream 229950 44295160 ~ 44301656 (-) True LOC110533996
XM_036990408.1 mRNA upstream 92492 44625922 ~ 44634804 (-) False LOC110534015
XM_036990407.1 mRNA upstream 92492 44625922 ~ 44634807 (-) False LOC110534015
XM_021618636.2 mRNA upstream 92492 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA upstream 92492 44625922 ~ 44636337 (-) False LOC110534015
XR_005053675.1 mRNA upstream 93505 44626935 ~ 44634810 (-) True LOC110534015
TU1016171 other downstream 222673 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 322342 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 820637 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 847686 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1283971 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 235020 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 477899 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1213885 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1213885 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1383849 45917279 ~ 45918339 (-) True G894917

Expression Profile