RNA id: TU1016403


Basic Information

Item Value
RNA id TU1016403
length 679
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G893457
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44596593 ~ 44597291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACGGCCTCCCACCTACAATCAGAGAAATACACCGgtcaactaccacctaaaaccacTAAACTGCTATTTTACTGTACTTTTACAATTCTGACATAAGTAACATTGAGACTGTTGTCACAAAAGTAAATGATGTGTAGGTTCATTCAAAATAATTGGGATAAAACTCACCAGACAACTTTTGCATCAAAGATAACCTACAAAGAGAAAGCTAACGCGTCAAACTAGTCACTGCGGCTTGCAGTTTATTCAGCACTGTAATCGTAGAGCACAAGTAAGTGACTGTATTTAAAAGCATGTGATTGTATGGTCttcatttcccctcctctctcctttgtcTGCCTCACCAGGATGAGAGCCAGCACAGAGAAGATGTAGTAGGTGGAGTCCCTGAACAGAGACCACCACGTTAGAACCACCGTCtgcagaggggagacagagagagaaacagagagacacTACTAATAGACAAGCAACACATAGCTGCCTCCTCATGTTCACTCAGCCAGTGCGTGTATAGGGAAACATGTTTCCATGTACTCATGAGGTCTTCAGCCATAGCCACACTGTTAAGGCCATAAAGGCGTGTAGTGCCAGAGGTCTATACCTGGCCCGCAAAGATGCCACACACACCAATGATGACCAGGATGTTGAAGACCGCTGAGCCCACGATGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016382 lncRNA downstream 21696 44574691 ~ 44574897 (-) True G893437
TU1016381 lncRNA downstream 22200 44574090 ~ 44574393 (-) True G893436
TU1016362 lncRNA downstream 63163 44531606 ~ 44533430 (-) True G893421
TU1016324 lncRNA downstream 104517 44491819 ~ 44492076 (-) True G893396
TU1016323 lncRNA downstream 107743 44488386 ~ 44488850 (-) True G893395
TU1016286 lncRNA upstream 5234 44602525 ~ 44603869 (-) True G893358
TU1016411 lncRNA upstream 11104 44608395 ~ 44608606 (-) True G893462
TU1016412 lncRNA upstream 12139 44609430 ~ 44609639 (-) True G893463
TU1016415 lncRNA upstream 18642 44615933 ~ 44616197 (-) True G893466
TU1016418 lncRNA upstream 21041 44618332 ~ 44618585 (-) True G893469
XM_036990398.1 mRNA downstream 83295 44511489 ~ 44513298 (-) True LOC110534010
XM_021618618.2 mRNA downstream 277034 44312153 ~ 44319559 (-) True LOC110534001
XM_021618617.2 mRNA downstream 287615 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 294937 44294538 ~ 44301656 (-) False LOC110533996
XM_036990408.1 mRNA upstream 28631 44625922 ~ 44634804 (-) False LOC110534015
XM_036990407.1 mRNA upstream 28631 44625922 ~ 44634807 (-) False LOC110534015
XM_021618636.2 mRNA upstream 28631 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA upstream 28631 44625922 ~ 44636337 (-) False LOC110534015
XR_005053675.1 mRNA upstream 29644 44626935 ~ 44634810 (-) True LOC110534015
TU1016171 other downstream 287660 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 387329 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 885624 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 912673 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1348958 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 171159 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 414038 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1150024 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1150024 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1319988 45917279 ~ 45918339 (-) True G894917

Expression Profile