RNA id: TU1016411


Basic Information

Item Value
RNA id TU1016411
length 212
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G893462
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44608395 ~ 44608606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatctgtgagctgctctgacagttggtgcttaaagctagtgagggagataagtgtttccagtttcagagattttgtagttcgttccagtcattggcagcagagaactggaaggagaggcggccaaagaaagaattggttttgggggtgaccagagagatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016286 lncRNA downstream 4526 44602525 ~ 44603869 (-) True G893358
TU1016403 lncRNA downstream 11104 44596593 ~ 44597291 (-) True G893457
TU1016382 lncRNA downstream 33498 44574691 ~ 44574897 (-) True G893437
TU1016381 lncRNA downstream 34002 44574090 ~ 44574393 (-) True G893436
TU1016362 lncRNA downstream 74965 44531606 ~ 44533430 (-) True G893421
TU1016412 lncRNA upstream 824 44609430 ~ 44609639 (-) True G893463
TU1016415 lncRNA upstream 7327 44615933 ~ 44616197 (-) True G893466
TU1016418 lncRNA upstream 9726 44618332 ~ 44618585 (-) True G893469
TU1016283 lncRNA upstream 12815 44621421 ~ 44623804 (-) True G893356
TU1016285 lncRNA upstream 29168 44637774 ~ 44639126 (-) True G893357
XM_036990398.1 mRNA downstream 95097 44511489 ~ 44513298 (-) True LOC110534010
XM_021618618.2 mRNA downstream 288836 44312153 ~ 44319559 (-) True LOC110534001
XM_021618617.2 mRNA downstream 299417 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 306739 44294538 ~ 44301656 (-) False LOC110533996
XM_036990408.1 mRNA upstream 17316 44625922 ~ 44634804 (-) False LOC110534015
XM_036990407.1 mRNA upstream 17316 44625922 ~ 44634807 (-) False LOC110534015
XM_021618636.2 mRNA upstream 17316 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA upstream 17316 44625922 ~ 44636337 (-) False LOC110534015
XR_005053675.1 mRNA upstream 18329 44626935 ~ 44634810 (-) True LOC110534015
TU1016171 other downstream 299462 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 399131 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 897426 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 924475 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1360760 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 159844 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 402723 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1138709 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1138709 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1308673 45917279 ~ 45918339 (-) True G894917

Expression Profile