RNA id: TU1015005


Basic Information

Item Value
RNA id TU1015005
length 272
lncRNA type antisense_over
GC content 0.67
exon number 1
gene id G892200
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44666547 ~ 44666818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCCTCTGACATCATGTGTAGCTCCTGCTCTCCCATCCAGGCCTCGGCCTCGGCAGCGTCGGTGTAGAACTGCTGGGCGCGGTTAGCCTCCACCAGCCGGGCGTGGCGCTCGTCCGTCTCAGCGATGAGCTGGGCCCAGGAGTCCCGGAGCTCCGCCAGGCGGCCCTCCAGAGCAGACCGCCTCTCCCCGTCCATCTCCTCCTGCCCTGGGGACATCCCCCTGCGGTGGGTCTGGATGTCATCAATACGGGGCTGGTGGCCCTGGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014997 lncRNA upstream 1924 44664262 ~ 44664623 (+) True G892192
TU1015003 lncRNA upstream 2623 44663696 ~ 44663924 (+) True G892198
TU1015015 lncRNA upstream 4176 44662066 ~ 44662371 (+) True G892210
TU1015101 lncRNA upstream 27411 44637764 ~ 44639136 (+) False G892293
TU1015102 lncRNA upstream 27482 44637764 ~ 44639065 (+) True G892293
TU1015008 lncRNA downstream 292 44667110 ~ 44667324 (+) True G892203
TU1015006 lncRNA downstream 654 44667472 ~ 44667722 (+) True G892201
TU1015390 lncRNA downstream 391032 45057850 ~ 45166003 (+) False G892532
TU1015365 lncRNA downstream 453868 45120686 ~ 45124746 (+) False LOC110534027
TU1015363 lncRNA downstream 455407 45122225 ~ 45124746 (+) False LOC110534027
XM_021618635.2 mRNA upstream 43871 44613844 ~ 44622676 (+) True LOC110534014
XM_021618633.2 mRNA upstream 64594 44574931 ~ 44601953 (+) False LOC110534013
XM_021618634.2 mRNA upstream 64594 44574932 ~ 44601953 (+) True LOC110534013
XM_036990403.1 mRNA upstream 92677 44527437 ~ 44573870 (+) False LOC110534011
XM_021618642.2 mRNA downstream 98413 44765231 ~ 44767832 (+) True LOC110534018
XM_036990421.1 mRNA downstream 326468 44993286 ~ 45003089 (+) False LOC110534023
XM_036990422.1 mRNA downstream 326489 44993307 ~ 45003084 (+) True LOC110534023
XM_036990423.1 mRNA downstream 373943 45040761 ~ 45123075 (+) False LOC110534027
XM_036990424.1 mRNA downstream 373944 45040762 ~ 45123075 (+) False LOC110534027
TU1014996 other upstream 7056 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 585137 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 586351 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 725990 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 923057 43742917 ~ 43743490 (+) True G891856
TU1015341 other downstream 342016 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 887419 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 902634 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 923541 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 955439 45622257 ~ 45643556 (+) False LOC110534042

Expression Profile