RNA id: TU1016460


Basic Information

Item Value
RNA id TU1016460
length 553
lncRNA type read_through
GC content 0.45
exon number 3
gene id G893508
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44954180 ~ 44959512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggattgctaaGAGATtgttggaggtagggattgctaaGAGATtgttggaggtagggattgctgagagagattttggaggtaggaattgctgagagagattttgctagagagattttgctgaggtcattgcagaggtcattgcagagtgaTTGATTGTGATAGAGAGATTTTTGCTGGAGGTTGatttgctgggagttcattgctgggaagttggtatgttttgtgagtttgttgctcagatatAGCTTATTTGATGtactttgtttcttagtttgtttgtgaaattgtttaatatcctgtttcatttgttcccagggggaaaggggaaggcaccttgggagtgcttaggcaagaggcccacgggcatacatatacccgtagtatattcattgtctaggtacactaggtaagacctgggcggaccaccccctgtattttggttagggcaccaggtggtgctaaattaggtaagtggtgggtaggcaggtaagataggagaggggggctttgagatttactttctttgctttggttccgtccagccccttttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016447 lncRNA downstream 237626 44716298 ~ 44716554 (-) True G893497
TU1016281 lncRNA downstream 296378 44655547 ~ 44657802 (-) True LOC110534017
TU1016426 lncRNA downstream 299146 44654813 ~ 44655034 (-) True G893477
TU1016285 lncRNA downstream 315054 44637774 ~ 44639126 (-) True G893357
TU1016283 lncRNA downstream 330376 44621421 ~ 44623804 (-) True G893356
TU1016766 lncRNA upstream 233617 45193129 ~ 45280890 (-) True G893782
TU1016817 lncRNA upstream 302631 45262143 ~ 45263484 (-) True G893822
TU1016765 lncRNA upstream 314962 45274474 ~ 45278522 (-) True G893781
TU1016833 lncRNA upstream 328640 45288152 ~ 45288513 (-) True G893834
TU1016794 lncRNA upstream 364454 45323966 ~ 45326807 (-) False G893809
XM_036990417.1 mRNA downstream 22336 44878607 ~ 44931844 (-) False LOC110533119
XM_021618653.2 mRNA downstream 102780 44845577 ~ 44851400 (-) True LOC110534022
XR_005053676.1 mRNA downstream 111057 44840712 ~ 44843123 (-) True LOC118936697
XM_021618652.2 mRNA downstream 132873 44818510 ~ 44821307 (-) True LOC110534021
XM_021618645.2 mRNA downstream 141272 44775368 ~ 44812908 (-) False LOC110534019
XM_021618657.2 mRNA upstream 43729 45003241 ~ 45010614 (-) False LOC110534024
XM_021618658.2 mRNA upstream 43729 45003241 ~ 45010947 (-) True LOC110534024
XM_021618659.2 mRNA upstream 53701 45013213 ~ 45017446 (-) False LOC110534025
XM_021618661.2 mRNA upstream 206106 45165618 ~ 45181157 (-) False LOC110534028
XM_036990427.1 mRNA upstream 206106 45165618 ~ 45181163 (-) True LOC110534028
TU1016497 other downstream 185108 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 645247 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 744916 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1243211 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 1270260 43683574 ~ 43683920 (-) True LOC110533962
TU1016641 other upstream 51817 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 787803 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 787803 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 957767 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 2271292 47230804 ~ 47233046 (-) True LOC110534118

Expression Profile