RNA id: TU1015341


Basic Information

Item Value
RNA id TU1015341
length 763
RNA type TUCP
GC content 0.44
exon number 8
gene id G892499
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45008834 ~ 45010849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTAGAGCAGCCAAGGCCCTCTCTGCATCTTTCCTGGTCATAAAGGCCACGAAGCCTCTGTTTGTGACCCTGGTACGTTCCTCGTCACTACGGGGCCACATGATCTTCACGCTTGCCAGGGGACCATACTTGCCAAACTCTTTGCAAAGCATTTCTTCATTCATCTTTGGGTTAATGCAGCCAATGTACAGGTTCGTTGTGTTCGGTGTTGCTGGGTCATCATCAAATATTGATCGTCGTGTTAGTGGTATGTCCAATTCTCCATACCCTCCTCCAGGCTCATTCTTCTTTTTTTTGTGCCTTTCTTCACGTTCCTCCTGTATTTGCTTTAGCTCCTCTTTGAAAAGTTCAAGGttgctcttcttcttctcttctgtcTTCTTTTTAACAATCGGCCTTCTGACTTCCGAAGAGTGTGCTGGTGAGACATTCTGGGACACTGAAGTAAACTTCGTGTTCGGTCGGTAAAGCTTGCTCTTTTTGACCTCTGCTGCTTCCTCTTCTTTAGTTGCATTCACGATCCCCCCACGAACAAACGTTTTCACCCCACTTTTGTCGTTACTGTCAAAAGATGCTAAAAACTCTTCAAAAACGTCAGCTGCTTTTTCTTGTTCCTTTTTCTTCAGATCTTCTTGTTCTCTCTTGGTCAATGTTCTCTTAACACCTACAGGTTTCCCTTTCTTGCCATTTTTGTCTGCCATGCTGATACGTAGAAATGTACAATGCGTTTGTTATTGCTCCACCATTTTGAATAGACAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015006 lncRNA upstream 341112 44667472 ~ 44667722 (+) True G892201
TU1015008 lncRNA upstream 341510 44667110 ~ 44667324 (+) True G892203
TU1015005 lncRNA upstream 342016 44666547 ~ 44666818 (+) True G892200
TU1014997 lncRNA upstream 344211 44664262 ~ 44664623 (+) True G892192
TU1015003 lncRNA upstream 344910 44663696 ~ 44663924 (+) True G892198
TU1015390 lncRNA downstream 47001 45057850 ~ 45166003 (+) False G892532
TU1015365 lncRNA downstream 109837 45120686 ~ 45124746 (+) False LOC110534027
TU1015363 lncRNA downstream 111376 45122225 ~ 45124746 (+) False LOC110534027
TU1015364 lncRNA downstream 111376 45122225 ~ 45124746 (+) False LOC110534027
TU1015366 lncRNA downstream 111376 45122225 ~ 45124746 (+) True LOC110534027
XM_036990421.1 mRNA upstream 5745 44993286 ~ 45003089 (+) False LOC110534023
XM_036990422.1 mRNA upstream 5750 44993307 ~ 45003084 (+) True LOC110534023
XM_021618642.2 mRNA upstream 241002 44765231 ~ 44767832 (+) True LOC110534018
XM_021618635.2 mRNA upstream 386158 44613844 ~ 44622676 (+) True LOC110534014
XM_021618633.2 mRNA upstream 406881 44574931 ~ 44601953 (+) False LOC110534013
XM_036990423.1 mRNA downstream 29912 45040761 ~ 45123075 (+) False LOC110534027
XM_036990424.1 mRNA downstream 29913 45040762 ~ 45123075 (+) False LOC110534027
XM_036990425.1 mRNA downstream 29913 45040762 ~ 45123075 (+) False LOC110534027
XM_036990426.1 mRNA downstream 29913 45040762 ~ 45123075 (+) False LOC110534027
NM_001124308.1 mRNA downstream 114703 45125552 ~ 45149685 (+) False LOC100135968
TU1014996 other upstream 349343 44655558 ~ 44659491 (+) True G892191
TU1014803 other upstream 927424 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 928638 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 1068277 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 1265344 43742917 ~ 43743490 (+) True G891856
TU1016991 other downstream 543388 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 558603 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 579510 45590359 ~ 45592309 (+) True LOC110534033
TU1017032 other downstream 611408 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 890196 45901045 ~ 45901811 (+) True LOC110534056

Expression Profile