RNA id: TU1016766


Basic Information

Item Value
RNA id TU1016766
length 1153
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G893782
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45193129 ~ 45280890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGTAATCAAATTTATTTGTTGTTGATCTTTTTTATATGACAGCAATGTTCACAAAAATGATAGCTTTGTATTTTAATTTCACTCAGTTTTGATCTTTACATTGTACAGTTGTGTAAGGACCATAGAAAACTCAATCAACCTCAATATTGGTACAATGTAGTCTACTCGTGGGATTTAAAAAGCATGCAATCAGACTTAAAAAGGTTTCATTTTACAAAGATAAGTTATTTTTTGGAGACAAAACTCACATATGAGAAACTAAAGGAACATACAGCAAGCCACAGGTCTAATTCTATAATTTTGCAAACTATCCTCTAAACTACGGAAAGTTTGTTTCTTTTCCTTCTAAAGTCGATAACAGTAGAAATATCCACGAGCAAAAGGAATTTCTCGCAAAATGAATATTGATGAAAACAAAGGCAAACAAAGAGGGCATGACAGAGAATCGTACACACGGACAGCTCAACCAGCAAATGAGATGATCTGACAATCatgattgttttttgtttttgtttacaggaACGTGAACTATATGAAGGCAGTTTGGGCCATCTGTTGACTAATGTGCTATACATATTCAGTGTGTATCAGTCATTGTGATCAGTAACGATGCTCAGTAATGACCACAGATGAATAGCTCTATGATCCGCGGCTGACAGGGGATGACTTATGGCTGTTAAGTCTGTTGTTGACTAGCCTTCTAAGGTAAACCGCCCTTCGAGTTGTTACAAATAATACACGAGAACAACGTTAGTTTCTTAGCTACATTATCGAACAAATGTAACTATTTTATCAATCTGTTTATTATTGTTGAGTAATATTGTAGTGAGGAACATTTCTTTACAACCCCATTGATGATAGTATTGGTTATTCATGAAAGCATCACCCCTGCGTACAGTATTGTATAAAGGTTTGAATGGTCTCTTAAATGGACTCTATTTGGGGATTCCTAGCACCATGGTAGAATGTTGAGTCTGGTAAGAGAATATTTTACAGATATGTCCAAAAGCCCTGTCCAATTCGAATCAACTTTGTCATAtggtgtacagtatgtctgtgtctgaatctgtgtgtctttgtgtgtgtgcaagcatgtgtgtatttacagtaccagtttggacacaactactcattcaaggGCTCTTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016460 lncRNA downstream 233617 44954180 ~ 44959512 (-) True G893508
TU1016447 lncRNA downstream 476575 44716298 ~ 44716554 (-) True G893497
TU1016281 lncRNA downstream 535327 44655547 ~ 44657802 (-) True LOC110534017
TU1016426 lncRNA downstream 538095 44654813 ~ 44655034 (-) True G893477
TU1016285 lncRNA downstream 554003 44637774 ~ 44639126 (-) True G893357
TU1016833 lncRNA upstream 7262 45288152 ~ 45288513 (-) True G893834
TU1016794 lncRNA upstream 43076 45323966 ~ 45326807 (-) False G893809
TU1016797 lncRNA upstream 43076 45323966 ~ 45326807 (-) False G893809
TU1016804 lncRNA upstream 43076 45323966 ~ 45326807 (-) True G893809
TU1016884 lncRNA upstream 106917 45387807 ~ 45388036 (-) True G893882
XM_036990427.1 mRNA downstream 11966 45165618 ~ 45181163 (-) True LOC110534028
XM_021618661.2 mRNA downstream 11972 45165618 ~ 45181157 (-) False LOC110534028
XM_021618659.2 mRNA downstream 175683 45013213 ~ 45017446 (-) False LOC110534025
XM_021618658.2 mRNA downstream 182182 45003241 ~ 45010947 (-) True LOC110534024
XM_021618657.2 mRNA downstream 182515 45003241 ~ 45010614 (-) False LOC110534024
XM_036990430.1 mRNA upstream 46421 45327311 ~ 45350171 (-) False LOC110534031
XM_021618666.2 mRNA upstream 46421 45327311 ~ 45381903 (-) True LOC110534031
XM_036990443.1 mRNA upstream 334984 45615874 ~ 45618337 (-) False LOC110534045
XM_036990441.1 mRNA upstream 334984 45615874 ~ 45618420 (-) False LOC110534045
XM_036990442.1 mRNA upstream 334984 45615874 ~ 45629020 (-) True LOC110534045
TU1016641 other downstream 177082 45011329 ~ 45016047 (-) True LOC110534025
TU1016497 other downstream 424057 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 884196 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 983865 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1482160 43710485 ~ 43710969 (-) True G892965
TU1018024 other upstream 466425 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 466425 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 636389 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 1949914 47230804 ~ 47233046 (-) True LOC110534118
TU1020355 other upstream 2706871 47987761 ~ 47989076 (-) True G896841

Expression Profile