RNA id: TU1016833


Basic Information

Item Value
RNA id TU1016833
length 362
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G893834
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45288152 ~ 45288513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTCATGGTTTTTGCTCCattagtacagataccaacacatcttgaccaccaaagtccatttgatgtcacaaagatgtccagtacttaaaaaatatcctctcctgttgtcctggtttccagtggttttcagaagaggatgtcttccttaattgaccccccataaacgtaacggacatataccaggaactgtgccaggcccgccaagTCTGTTGACTCATTCAGCTGTAACgtatataattcactggcttgtatgcgaagcagtaattgtttcaaaacatctcctgccatgtcactgatgcgtcatgaaacagtgttgtttgatgaaggccttgtctgtatagtttttttggcctttacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016766 lncRNA downstream 7262 45193129 ~ 45280890 (-) True G893782
TU1016765 lncRNA downstream 9630 45274474 ~ 45278522 (-) True G893781
TU1016817 lncRNA downstream 24668 45262143 ~ 45263484 (-) True G893822
TU1016460 lncRNA downstream 328640 44954180 ~ 44959512 (-) True G893508
TU1016447 lncRNA downstream 571598 44716298 ~ 44716554 (-) True G893497
TU1016794 lncRNA upstream 35453 45323966 ~ 45326807 (-) False G893809
TU1016797 lncRNA upstream 35453 45323966 ~ 45326807 (-) False G893809
TU1016804 lncRNA upstream 35453 45323966 ~ 45326807 (-) True G893809
TU1016884 lncRNA upstream 99294 45387807 ~ 45388036 (-) True G893882
TU1016887 lncRNA upstream 100531 45389044 ~ 45389258 (-) True G893885
XM_036990427.1 mRNA downstream 106989 45165618 ~ 45181163 (-) True LOC110534028
XM_021618661.2 mRNA downstream 106995 45165618 ~ 45181157 (-) False LOC110534028
XM_021618659.2 mRNA downstream 270706 45013213 ~ 45017446 (-) False LOC110534025
XM_021618658.2 mRNA downstream 277205 45003241 ~ 45010947 (-) True LOC110534024
XM_021618657.2 mRNA downstream 277538 45003241 ~ 45010614 (-) False LOC110534024
XM_036990430.1 mRNA upstream 38798 45327311 ~ 45350171 (-) False LOC110534031
XM_021618666.2 mRNA upstream 38798 45327311 ~ 45381903 (-) True LOC110534031
XM_036990443.1 mRNA upstream 327361 45615874 ~ 45618337 (-) False LOC110534045
XM_036990441.1 mRNA upstream 327361 45615874 ~ 45618420 (-) False LOC110534045
XM_036990442.1 mRNA upstream 327361 45615874 ~ 45629020 (-) True LOC110534045
TU1016641 other downstream 272105 45011329 ~ 45016047 (-) True LOC110534025
TU1016497 other downstream 519080 44768450 ~ 44769072 (-) True G893541
TU1016171 other downstream 979219 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 1078888 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 1577183 43710485 ~ 43710969 (-) True G892965
TU1018024 other upstream 458802 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 458802 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 628766 45917279 ~ 45918339 (-) True G894917
TU1019905 other upstream 1942291 47230804 ~ 47233046 (-) True LOC110534118
TU1020355 other upstream 2699248 47987761 ~ 47989076 (-) True G896841

Expression Profile