RNA id: TU1017023


Basic Information

Item Value
RNA id TU1017023
length 228
lncRNA type intronic
GC content 0.41
exon number 1
gene id G894007
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45619903 ~ 45620130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagtatattaatagaaaaagtgtgtacagcagtagttataaaGGATGAGCCAATAATAGAGACCAGTATATGCATATAAAAGAGGgcaaaacagtatgtaaacatttttaaagtgaTCAGTGTTCAATGACTGTAGATAGGGAAAAGCAGTCTCGGTAAGGTGCAGGGtcgagtaccgggtggtagccagctagtaacagtgactaaggttcagggcagggtactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017022 lncRNA upstream 966 45618622 ~ 45618937 (+) True G894006
TU1017021 lncRNA upstream 1342 45617263 ~ 45618561 (+) True G894005
TU1017018 lncRNA upstream 6999 45612581 ~ 45612904 (+) True G894002
TU1017015 lncRNA upstream 11587 45607982 ~ 45608316 (+) True G893999
TU1017007 lncRNA upstream 19919 45599782 ~ 45599984 (+) True G893991
TU1017029 lncRNA downstream 11621 45631751 ~ 45654903 (+) True LOC110534042
TU1017042 lncRNA downstream 37688 45657818 ~ 45658048 (+) True G894021
TU1017051 lncRNA downstream 56472 45676602 ~ 45676897 (+) True G894028
TU1017091 lncRNA downstream 69608 45689738 ~ 45747021 (+) True G894037
TU1017129 lncRNA downstream 164539 45784669 ~ 45785365 (+) True G894068
XM_021618669.2 mRNA upstream 27574 45553481 ~ 45592329 (+) False LOC110534033
XM_021618670.2 mRNA upstream 27574 45553481 ~ 45592329 (+) False LOC110534033
XM_036990434.1 mRNA upstream 70473 45487241 ~ 45549430 (+) False LOC110534036
XM_036990440.1 mRNA downstream 2034 45622164 ~ 45654911 (+) False LOC110534042
XM_036990438.1 mRNA downstream 9007 45629137 ~ 45654911 (+) False LOC110534042
XM_036990439.1 mRNA downstream 9409 45629539 ~ 45654911 (+) False LOC110534042
XM_021618674.2 mRNA downstream 46234 45666364 ~ 45673837 (+) False LOC110534038
XM_021618677.2 mRNA downstream 46235 45666365 ~ 45673504 (+) False LOC110534038
TU1016990 other upstream 27594 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 35269 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 51311 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 609054 45008834 ~ 45010849 (+) True G892499
TU1014996 other upstream 960412 44655558 ~ 44659491 (+) True G892191
TU1017032 other downstream 2127 45622257 ~ 45643556 (+) False LOC110534042
TU1017187 other downstream 280915 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 496155 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 1007162 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1420384 47040514 ~ 47042783 (+) True G895515

Expression Profile