RNA id: TU1017091


Basic Information

Item Value
RNA id TU1017091
length 3424
lncRNA type read_through
GC content 0.41
exon number 2
gene id G894037
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45689738 ~ 45747021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acattttaaactcaggctgtaagacaaaatgtggaaaaagacaaggagtgtgaataccttctgaagacaCTGATAGTTTCAAACAATCTGGTTTGATTTAGCTTTTTGTCCCCACCCCACTACTGATTAACTTGTAATTTTAGGAACAGCAAAAATAGTTTGAGCAAGCAATATGTCAATATCTTTATATTGGCGTTGTCATAGCGCATCACTAATGTATTTCAATCACCATTTTATTTCAGCGGGCTTTATCTCGCTTTGAAAAAACTTGAAGCCAATTCCCAATGATATTGGGCTGGATGCTAATATGGGAAAAACTGCTGAATGATCAGAGAAATTATAGTCGAAGCTTTTCTTTTAGGCTATTTACAGAAAAATAAGTCCTGGACGCTTTGCTAGCAATAAGACAAGAAATCCACAGGGGCCGACCAATTGGATCCCGGTCTGCTTTAGTGTGCAGGGCCCATCATTGTTGGCTTAATATCCCACATTAAACATTGTTATCACGAGaaaaaaaagcaacaaaaaaaaagtataGAGATCAGCTGGCGCTGCCACTTCATAAGGGCACGGATAGTAGTGATCTTAAAATCATTTTTCGCCCCATTTCAAGGCTTCCTTGTCGAGATAGGAATCTTGAATCTTTAGTAAAATGTACAACTtcgctctttttttttttatctgagaaatgtatttagaatgtaaaccaatcagggtttaggcctgggcatAGCACCATCACAGCAACCACTTTAGTTATTCATGATCTTATCCATGCTTTAGACACTAAAAATAAATGCTGCTTTGTTTGTGGACCTGTCAAAAGATTTGATTGAATAAGTTGTCCTCGATAGGCATGAGCTCTGACGGCTGTTCATGGTTTCATGATTATCTAagtgacagaactcaggccatcgTGATTGATGGGGTTAAGTCTGAATTTCCTGACGTACATAAAGGTGTACCACAGCGAGCGTTTTTGGGacagttttttcccctcactATTTATATGTACACACCATTGGTCAATCTGCACTTCctctacagtgcatttgggaaagtatttagacagcttcacttttttcacattttgttacgttacagcattattctaaaatggatgtaaAAAACGAATCctcaggcctcccgggtggcacggtggtctaaggcactgcgtcgcagtgctagctgtgccactagagattctgggttggagtccaggctctgtcgcagccggccacaaccgggagacccatgaccgcacaactggcccagcgtcgtccggatttggcggcaaggatgtccttgtcccgtcgcactctagcgactcctgtggtgggccgggcacagtgcacgctgacacagtcgtcaggtgtacagtgtttcctataacacattggtgcggctggcttccaggttaagcgagcagtgtctcaagaagcagtgcagcttggttgggttgtgtttcgcctctcccgagtccgtacaggagttgcagcgatgagacaagactaactaccaattggataccacgaaaagggggAGGGGGTTGTGGGCCCCCAGGAGGTCATGGGCCCCGGAGCACTTGCTCTGCATGTCCTTTCGGTAATCTGACCCTCCACAATCTTGTGGATACAAGATACAAGTTCAAACCATTTGTCTTGCAAATGGAAAAGGCCTATTAATTTGTGCAGCCCCATAGGAGAGAAGGGTAGAAAGAAGCCTGAGGTGAATCGTAAAGGATAACAAGGCAAGACAATTCTGTAGTTTGCACACCAGTTTGTCGTTTCCAGCCATGTCAGATAATTGACGTTAAAAATATGTCATAAAATATTTTGTTTGTGAGATATTGACAGCGAGTTCCTAAAAAGGCACCTGGTATTATTGTGAATGTACCTTACTAAAAATGGTGTGTTGACTATGCGCTGAGAGGCAGGCTACATTTTGCTATGTTGTCTTTACTTGAAAAGCAAGAGTTAGAAAACCGGCCGTGTGAGTGATGTAGGTGATATCATTGTCCTTTAAGTCATGCTCGCAGTGAATATCGGTTTGTTATTTGTTTATTAGACTTTACACGAGGCTAAAGTGCCATCCTTTTTATTTGTTGGTAGTTACTTtcgctgtaatgtaatgtaatgtatagtaTACCTTTGGTTGGTTAAAGCTTACCGTTGTTTCGACAGAGGACATAtgaataaggtgtgtgtgtgtgtgttgactttaATATGCACTCCAggatcttaagcacaacaaagttgTAACATATAGTGCAAATTGGATTCATAACATATGAATTGCAAaaaatatttataataataataataatttgccgGCCGTGACATATtttacgaaatggatgatgtaaTACACAAATTGAGGAAGTAGTACACAAAAAGGGGGcccacttttggctcgtgagcaccactttcaaaaTTACTGGCTGATATAATCAAACGTTTGAGAGTGCATATTTAACATGGAAGAGGAGTGGTCGGTATTTCTACTTGGATTACTATTTGTCAGACAAGGTTTTCTCGACTGGTCGACCTCGCATTCGACATTGCGTAGAATATAGTATTTTTTCTGTCAATTTGTATTTTCTCATTAGAGTGAAAAACTAGGAAGCATTGATTTGAAGTTTAAATGGAGCAATTTCTCCTCTTCTGTCCAGTCCTATAAATGTAGCCTTCAGACCTGTTGACATTTGGACCATTGTCGGGACAACGCCATATACTTTGGACCCTTTACTCATCAATCATGAGAGAACAATGGTTTTACTCTGCTATTCATAAGTTACAcaacaaccacaaacacacagagacaatttGAAATGTTCAGACCTTGTTCGTTGTCACGGCGCAGTTGGCCGACCTCTCCCTCTCAAATCAGTGAATCCTGTTAGTTGAGATGAATATTGAACTAACAGTGGCCCTAGTAcctgtgtccacacacacacctgctcatCTACCTGTAGTGTAAGCATCACGTGACACCGCCCTTGCTTGCTTTGCATGACTTGACTGCGACCAAGGAGCACAGCACCCAGGGTACTATTTACAAATGGACAACACATGATATGCTTATGTTGACTATCTGTTTGTTTAATTCATATATTTTTCTTTGATCGCCTGTAATGCATCAATGGAATGATGTGAGGCACCTGCAGTGTAGGCCTACTTCAATAACACAACACTAGTTTTATATGCAAACAGTTTGATCCTCAATATAATATAGCTATTTTGTGTTAAAGTTGTCAATTTCAAAATAACCAAAATTGGGCTATTATTGGCACTAATGATGTTGAAACCCTGAAAAGGTTCACAGCACTCTTAGATGTTAGACATTTTACAGTAAAGTATTGCTGAGGTTTTTAGACGGATTTAGGTGCAATTTAAGTTAATGTGTAATCTCTAATTGTCAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1017051 lncRNA upstream 12841 45676602 ~ 45676897 (+) True G894028
TU1017042 lncRNA upstream 31690 45657818 ~ 45658048 (+) True G894021
TU1017029 lncRNA upstream 34835 45631751 ~ 45654903 (+) True LOC110534042
TU1017023 lncRNA upstream 69608 45619903 ~ 45620130 (+) True G894007
TU1017022 lncRNA upstream 70801 45618622 ~ 45618937 (+) True G894006
TU1017129 lncRNA downstream 37648 45784669 ~ 45785365 (+) True G894068
TU1017128 lncRNA downstream 38502 45785523 ~ 45785778 (+) True G894067
TU1017131 lncRNA downstream 41153 45788174 ~ 45788596 (+) True G894070
TU1017134 lncRNA downstream 41675 45788696 ~ 45788966 (+) False G894071
TU1017135 lncRNA downstream 41675 45788696 ~ 45788998 (+) False G894071
XM_021618674.2 mRNA upstream 15901 45666364 ~ 45673837 (+) False LOC110534038
XM_021618676.2 mRNA upstream 15901 45666576 ~ 45673837 (+) True LOC110534038
XM_021618677.2 mRNA upstream 16234 45666365 ~ 45673504 (+) False LOC110534038
XM_036990438.1 mRNA upstream 34827 45629137 ~ 45654911 (+) False LOC110534042
XM_036990451.1 mRNA downstream 12679 45759700 ~ 45770162 (+) False LOC110534034
XM_021618671.2 mRNA downstream 12954 45759975 ~ 45770162 (+) True LOC110534034
XM_021618691.2 mRNA downstream 31262 45778283 ~ 45782588 (+) True LOC110534050
XM_021618693.2 mRNA downstream 45187 45792208 ~ 45800378 (+) False LOC110534052
XM_021618695.2 mRNA downstream 45187 45792208 ~ 45800378 (+) False LOC110534052
TU1017032 other upstream 46182 45622257 ~ 45643556 (+) False LOC110534042
TU1016990 other upstream 97429 45590359 ~ 45592309 (+) True LOC110534033
TU1016992 other upstream 105104 45569452 ~ 45584634 (+) False LOC110534033
TU1016991 other upstream 121146 45554237 ~ 45568592 (+) False LOC110534033
TU1015341 other upstream 678889 45008834 ~ 45010849 (+) True G892499
TU1017187 other downstream 154024 45901045 ~ 45901811 (+) True LOC110534056
TU1017351 other downstream 369264 46116285 ~ 46117943 (+) True G894204
TU1017607 other downstream 880271 46627292 ~ 46700540 (+) True G894437
TU1018880 other downstream 1293493 47040514 ~ 47042783 (+) True G895515
TU1018992 other downstream 1395023 47142044 ~ 47151549 (+) False LOC110511048

Expression Profile